Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq36 594 6e-165 >seq36 Length=158315 Score = 594 bits (658), Expect = 6e-165 Identities = 756/1034 (73%), Gaps = 10/1034 (1%) Strand=Plus/Minus Query 6257 TATCACAGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGT 6316 ||| | || || || || | ||| || || || || || |||||||| |||||||||||| Sbjct 40795 TATTAAAGGGCATTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGGT 40736 Query 6317 TGATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAG 6376 ||||| || ||||||||| || | || ||||||||| | || | || || ||||| Sbjct 40735 TGATCTTGTGTTGCCATCCATGCTCTTATACCTTCATTTAGAAGTAAATTTTTAGTATAA 40676 Query 6377 AACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCT 6436 || ||||| || ||||| ||||| || || | | ||||| || ||||| ||||| || Sbjct 40675 AAAGTCTCAAATTCTGGGTCCTCTGCGGCACGTAATTCTTGAGAGACAAAATCATATGCA 40616 Query 6437 C-TAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAG---GTCCAAAGACCCATAAC 6492 | ||| |||| |||||| || || |||||||| |||| ||||| | || |||| Sbjct 40615 CGTAAATTTAA-TGCAAGTCCTATGATACCAAT---AGAGCTTGTCCATAATCCTGTAAC 40560 Query 6493 AGGAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGAT 6552 || ||||| |||||||| ||||||||||| | || || || || | |||||| || Sbjct 40559 TGGCACAAATAGCATAAAAAAATGTAGCCATCTTTTGTTAGAAAATGCAACACCAAAAAT 40500 Query 6553 CTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTC 6612 || ||||| |||||||||||||| ||||| ||||| || |||||| |||||| || Sbjct 40499 TTGTGACCAAAAACGATTAGCCGTAACCATTGAATAAGTTTCCTCTGATTGTGTTGGTGT 40440 Query 6613 AAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGC 6672 ||| ||| |||||||||| | ||| |||||||| || || |||||||||||||| || Sbjct 40439 AAAAGCCCTGAAAGTATTAGCAGCTTCGCCATCTTCGAATAATGTATTCTCTACAGTCGC 40380 Query 6673 ACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAA 6732 || ||||||||||| || |||||||| || | || || || ||||||||||||||||| Sbjct 40379 TCCATGAATAGCACAAAGTAATGCTCCTCCGAGTATTCCAGCAACACCCATCATATGAAA 40320 Query 6733 CGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGC 6792 || || | ||||| || ||||| || |||| || | | || || || || ||||| Sbjct 40319 TGGATTTAAAGTCCAATTATGGAAACCTTGTAAAAATAAAATAAATCGAAAGATAGCTGC 40260 Query 6793 AACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGAC 6852 ||| ||||| || ||||| |||||||| | || || || ||||| || ||||| || Sbjct 40259 AACTCCAAAACTAGGAGCAAAAAACCAACTAGCTTGCCCAAGTGGATAAATAAGAAATAC 40200 Query 6853 AGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGAC 6912 || ||||| || ||||| || || ||||| || ||||||||||| || | ||| ||||| Sbjct 40199 TGAAACAAAAACTGCAATTGGTCCTGAAAAAGCTATTGCATTGTATGGCCTAATTCCGAC 40140 Query 6913 TAGACGTGCGATCTCAAACTGCCG-AAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGA 6971 || | || || ||||| || || || || |||||||| | |||||| || || || | Sbjct 40139 TAATCTGGCTATTTCAAATTGACGCAAACAA-AAACCTATCAAGGCAAAAGCACCATGTA 40081 Query 6972 GCGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTT 7031 || ||||| ||| || || |||| ||| ||| | ||||| || ||||||| Sbjct 40080 AAGCAGTAAAAGTCCAAAGACCTCCAATTTGACACCATCTAGTAAAATCACCTTGAGCTT 40021 Query 7032 CTGGACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAG 7091 |||| ||||||| || | || || ||||| | | | |||||| ||||||| |||| Sbjct 40020 CTGGTCCCCATAAAAATAATAATGAGTGTCCCATACTATTTGCAGGACTTGATACTGCAG 39961 Query 7092 CAGTAAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCG 7151 | || | ||||||||||| || | ||| |||||||| | || || || ||||| | Sbjct 39960 CGGTTAAAAAATTACATCCTTCTAAATAAGAAGAAGCTAAACCATGCGTATACCAAGAAG 39901 Query 7152 TGACGAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAA 7211 | || |||||||| || || | ||| | || || || || || | | || || || | Sbjct 39900 TAACAAAAGTTGTACCTGTAAACCAGGCACCTAGAGCTAGATATGAACATGGAAAAAGTA 39841 Query 7212 GAAGACCTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACAT 7271 | | ||||||||| |||| ||| || || | |||||| || ||||| ||||| | || | Sbjct 39840 GCAAACCTGACCATCCAATAAAGACAAATCGATCACGTTTTAGCCAATCATCAACTAAGT 39781 Query 7272 CAAACCACCCCCTT 7285 | |||||||| ||| Sbjct 39780 CGAACCACCCTCTT 39767 Score = 475 bits (526), Expect = 4e-129 Identities = 699/987 (71%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 7544 TCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGG 7603 || ||||| ||||| || |||||||| || ||||| ||||| || || | | ||||| Sbjct 26789 TCTAGAGGAAAGTTATGTGCATTACGTTCATGCATTACTTCTATTCCTAAATTTGCACGA 26848 Query 7604 TTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTG 7663 || | | || ||||| || || | || | |||||| ||||| | || || || Sbjct 26849 TTTAAAATATCAGCCCAAGTATTAATTACTCTTCCTTGAGAATCAACAACAGATTGATTA 26908 Query 7664 AAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATG 7723 || || || || || | ||| |||||||| ||||| | ||| | || |||| ||| || Sbjct 26909 AAATTAAATCCATTTAAGTTAAATGCCATTGTGCTGATACCTAAAGATGTGAGCCAAATA 26968 Query 7724 CCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCG 7783 | || ||||||||| || | |||||| || | || || || || || || || Sbjct 26969 CATACTACTGGCCATAAAGCTAAGAAGAAATGTAATGAGCGTGAATTATTAAAGCTTGCA 27028 Query 7784 TATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCT 7843 |||||||| || | | ||||| || || ||||||||||||||||| || || || | | Sbjct 27029 TATTGGAAAATTAATCTTCCAAAATAACCATGAGCAGCAACGATGTTATAAGTTTCATAT 27088 Query 7844 TCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGA 7903 ||||| || || |||||||||| ||| |||||| ||| || |||||||| | || | Sbjct 27089 TCTTGGCCAAATTTATAACCATTGTTTGCAGACTCATTCTCTGTTGTTTCACGTATCAAA 27148 Query 7904 GAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCG 7963 || |||||||| || || ||||| ||||| || | ||||| ||||| |||||||| Sbjct 27149 CTTGAAGTTACAAGAGAGCCGTGCATTGCACTAAATAATGAACCTCCAAATACACCAGCA 27208 Query 7964 ACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATG 8023 || |||| ||| || || || ||||| | || || || || |||||||| || | ||| Sbjct 27209 ACACCCATCATATGAAACGGATGCATTAAAATATTATGTTCAGCTTGGAAAACTAACATA 27268 Query 8024 TAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAA 8083 | || || |||||||| || || | |||||| | || || ||| |||||| || | | Sbjct 27269 AAATTAAAAGTACCAGAAATACCTAATGGCATACCATCTGAAAAACTACCTTGTCCAATA 27328 Query 8084 GGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATC 8143 ||||||| | |||||||| | ||||||||||| ||||| ||| | ||||| ||| Sbjct 27329 GGATAGATAATAAATACAGCTGTGGCTGCAGCAACAGGAGCTGAGAAAGCTACGGCTATC 27388 Query 8144 CAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATA 8203 || |||||||| || ||||| || | |||||| ||||| ||||| |||||| | || Sbjct 27389 CAAGGACGCATTCCAAGACGATAGCTTAATTCCCATTCACGTCCCATATATGCACAAATT 27448 Query 8204 CCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCA 8263 || || | |||||| || | | | || ||||||| || || || ||||| ||||| Sbjct 27449 CCAATAAAGAAGTGCAAAACTATTAATTCATAAGGACCGCCATTATATAGCCATTCATCT 27508 Query 8264 AGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACA 8323 | ||| ||||||||||| || |||||||| || | || || || ||||| | ||| ||| Sbjct 27509 AAAGATGCTGCTTCCCAAATAGGATAGAAATGTATTCCTATTGCATTAGATGTAGGTACA 27568 Query 8324 ACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATG 8383 | |||||||| || || || || ||||| | | || || | || ||||| | || Sbjct 27569 ATAGCACCAGTTATAATATTATTTCCATATAACAATGATCCTGAAACTGGTTCTCTAATA 27628 Query 8384 CCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAGCAGC 8442 ||||| || || || || |||||||| | || | | || || ||| || | ||| | Sbjct 27629 CCGTCTATATCAACTGGTGGAGCAGCTATAAATCCAATTATAAATACAGAT-GTAGCTGT 27687 Query 8443 GAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGTTGGTGGA 8502 || | ||||| ||||| | || || |||||||| | || |||||||| | ||| Sbjct 27688 TAGTAATGTAGGGATCATTAATACTCCAAACCAACCTATGTAGAGACGATTTTCTGTGCT 27747 Query 8503 GGTTACCCAGTTACAGAATTGTTCCCA 8529 || | ||| ||| || ||||||| Sbjct 27748 AGTAATCCAAGAACAAAAACGTTCCCA 27774 Score = 95.1 bits (104), Expect = 2e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 176122 TGGGCAGGGAGGGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCCA 176181 ||||| ||| ||||||||||| |||||| | | ||||||||||||||||||||| ||| Sbjct 59017 TGGGCCGGGTTGGATTTGAACCAACGTAGGAAAAACCAGCGGATTTACAGTCCGCCCCCA 58958 Query 176182 TTAACCACTCGGACACCTACCCTAA 176206 |||||| ||||| |||| |||| || Sbjct 58957 TTAACCGCTCGGGCACCGACCCAAA 58933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622121432749520