Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq54 109 1e-18 seq6 104 6e-17 >seq54 Length=107229 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| ||||| |||||||| || | || ||||| | | ||| | || || Sbjct 11715 CAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCCGATAGAGTACGACCGTC 11774 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| || || || || || ||||| | ||| || ||||| ||| |||||||||| || Sbjct 11775 TTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAGGAATTCCTTCTTTATC 11834 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || |||||| ||| ||| || | || || | | |||||| || | || || || Sbjct 11835 TTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGT 11894 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || |||||||||||||| ||||| Sbjct 11895 CTTTCCTGTAAGAGTTTTCACAAAGATTTG 11924 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| ||||| ||||| || || | || ||||| | | ||| | || || Sbjct 11259 CAGCACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTC 11318 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| || || || || || ||||| | ||| || ||||| ||| |||||||||| || Sbjct 11319 TTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATC 11378 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || |||||| ||| ||| || | || || | | |||||| || | || || || Sbjct 11379 TTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGT 11438 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || |||||||||||||| ||||| Sbjct 11439 CTTTCCTGTAAGAGTTTTCACAAAGATTTG 11468 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| ||||| |||||||| || | || ||||| | | ||| | || || Sbjct 11487 CAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCTGATAGAGTACGACCGTC 11546 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| || || || || || ||||| | ||| || ||||| ||| |||||||||| || Sbjct 11547 TTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATC 11606 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || |||||| ||| || || | || || | | |||||| || | || || || Sbjct 11607 TTGTATCTTTGACTTGACATTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGT 11666 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || |||||||||||||| ||||| Sbjct 11667 CTTTCCTGTAAGAGTTTTCACAAAGATTTG 11696 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| ||||| || || | || ||||| | | ||| | || ||||| || || Sbjct 11040 GTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTG 11099 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || || || ||||| | ||| || ||||| ||| |||||||||| || || ||||| Sbjct 11100 TTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTT 11159 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 | ||| ||| || | || || | | |||||| || | || || ||||| || || Sbjct 11160 TGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGT 11219 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 |||||||||||||| ||||| Sbjct 11220 AAGAGTTTTCACAAAGATTTG 11240 >seq6 Length=291449 Score = 104 bits (114), Expect = 6e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| ||||| || |||| || || |||| | || ||||| ||||||| ||||||||| Sbjct 274516 AGTAGACTCTTTCTGGATATTATAATCAGAAAGCGTTCTTCCGTCTTCCAACTGCTTTCC 274457 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 ||| || || || | ||| || || ||| ||| |||||| || |||||||| || Sbjct 274456 GGCAAAAATAAGTCTCTGTTGATCTGGAGGAATACCTTCTTTATCTTGAATCTTGGATTT 274397 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| ||||| || || | | ||| || ||||| || || || || || || | || Sbjct 274396 CACATTTTCGATTGTATCAGAAGGTTCAACTTCCAATGTTATGGTTTTTCCAGTCAACGT 274337 Query 199612 TTTCACAAAAATTTG 199626 ||||||||| ||||| Sbjct 274336 TTTCACAAATATTTG 274322 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 |||||| || |||||||||||||||||||| ||||| || | | ||||| || |||| Sbjct 274444 ACTTATTTTTGCCGGAAAGCAGTTGGAAGACGGAAGAACGCTTTCTGATTATAATATCCA 274503 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAG 201023 ||||||||||||| | || | |||||||| Sbjct 274504 GAAAGAGTCTACTTTACATTTGGTTTTGAG 274533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178915059564011