Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq26 113 6e-20 seq6 105 8e-18 seq21 102 1e-16 seq63 98.7 1e-15 seq19 95.1 2e-14 seq8 89.7 6e-13 seq1 82.4 9e-11 >seq26 Length=183063 Score = 113 bits (124), Expect = 6e-20 Identities = 332/502 (66%), Gaps = 11/502 (2%) Strand=Plus/Minus Query 101816 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGA 101875 ||||||||||||||| ||||| | || | || ||||| |||||||||| | |||| Sbjct 77612 TTGGACTGCTGAAGAAATAGATTTATCGAGTGACTTGGAAGATTGGAAGAAATTGAATGC 77553 Query 101876 AAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGT 101935 | |||| | ||||| || | |||| |||||||| ||||| |||||||| Sbjct 77552 AGATGAGCGCCATTTCATTTCTCACGTATTGGCTTTCTTTGCATCTTCCGACGGAATTGT 77493 Query 101936 TTTTGAGAATATCA-ATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATCT 101993 ||| ||||| | | || | |||| | ||| || || || | | ||||| ||| | Sbjct 77492 TTTGGAGAACCTTGCAGAAAGATTTTGTCG-TGATGTCCAGATTC-CAGAAGCACGATGT 77435 Query 101994 TTCTATGCGTATCAATGTCATAATG-AAATGGTGCATGGGGAGACATACAGTAAACTCAT 102052 || |||| | |||| | |||| ||| | ||| ||| || || | || || Sbjct 77434 TTTTATGGATTTCAAA-TAGCAATGGAAAATATTCATTCGGAAACTTATTCTCTTCTTAT 77376 Query 102053 AGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGT 102112 || | |||||| |||| | || ||| | | |||||||| || || | Sbjct 77375 CGATACTTATATTCGAGATGCTCAAGAAAAGGCTCGTTTATTTGAAGCAATGGAACGTAT 77316 Query 102113 TCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG-TCGCGTT 102171 ||| |||||| | || || || | |||||| | | ||| || ||| || | Sbjct 77315 TCCTTGTATTGAGAAAAAGGCTCAGTGGGCTTTAAGATGG----ATCCAATCCTCTGCCT 77260 Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 | ||||||||||| | | |||||||| ||| ||||| || || || |||||||| | Sbjct 77259 CTTTTGCTGAGCGTTTAGTGGCATTTGCTGCTGTAGAGGGAATATTTTTTTCTGGTTCTT 77200 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 | || | || | |||| | || ||| |||| || |||||||| | |||||| || | Sbjct 77199 TTTGTTCCATATTTTGGTTGAAAAAGAGAGGACTTATGCCAGGATTGACCTTCTCTAATG 77140 Query 102292 AGCTTATCTCTCGTGACGAGGG 102313 ||||||| || ||||| || || Sbjct 77139 AGCTTATTTCACGTGATGAAGG 77118 >seq6 Length=291449 Score = 105 bits (116), Expect = 8e-18 Identities = 303/457 (66%), Gaps = 22/457 (5%) Strand=Plus/Plus Query 15933 CGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTG 15990 ||||| ||||| || || |||| ||||| ||||| || | ||||| ||||| |||| Sbjct 227003 CGATTAGTTGCTGCAATAACAATGATACCATTGTTTGCTT--CGAAACCGTCCATTTCTG 227060 Query 15991 TCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACT 16048 | | | ||||| | ||||||||| | ||||||||| ||| ||| ||| || | Sbjct 227061 TAAGCAATTGGTTGAGAGTTTGTTCTCTTTCATCATTTCCGCCCGCAAT--ACCGGCTCC 227118 Query 16049 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTT 16104 | |||| | || || ||||| || |||||||| || | || || || || |||| Sbjct 227119 TCTTTGCCTACCTACTGCATCTATTTCATCAATAAAAATAATACAAGGAGCATTCTTTTT 227178 Query 16105 CGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCA 16164 || | | |||| | ||| || ||||| | ||||| ||||||||||||||||| | Sbjct 227179 GGCTTGTG----CAAATAAATCACGAACACGACTAGCGCCAACACCAACAAACATCTCAA 227234 Query 16165 CAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGG 16223 |||| | || | | | || | | ||||| || | ||| || || | |||| Sbjct 227235 CAAACTCTGAACCTGCA-ATAGACAAAAAGGGTACTCCTGCTTCTCCAGCTACAGCTCTT 227293 Query 16224 GCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTG 16283 || || || || || || || ||||| ||| | || | | |||| ||||||||| Sbjct 227294 GCAAGTAGTGTTTTTCCTGTTCCTGGTGGTCCCTCAAGAATAACTCCTCTTGGAATCTTT 227353 Query 16284 GCGCC--ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATT 16341 || || || | || | | || | | ||| ||||| |||| |||||| | || Sbjct 227354 GCTCCTAGCTGCGTAA--AACGATCTGAATCCTTCAGAAATGAAACAACCTCTTCAAGTT 227411 Query 16342 CATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 16378 | |||| || | ||| || |||||||| |||| Sbjct 227412 CCACTTTTGCTCCATCACAACCTGCAACATCGTTAAA 227448 >seq21 Length=200491 Score = 102 bits (112), Expect = 1e-16 Identities = 333/508 (66%), Gaps = 11/508 (2%) Strand=Plus/Minus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 ||| | ||| ||||| | ||| || ||||| || || | || | ||||| | ||||| Sbjct 52818 GATTTGACGGTCAAATCTACCGGGTCGAAGCAGTGCATTGTCCAAAATATCTGCTCGATT 52759 Query 15938 CGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAA 15995 ||| | ||| ||||||| ||| | ||| | | ||| |||||||| || || Sbjct 52758 AGTTCCTCCGAACACAACAACACCACTATTTGGAGA--AAATCCATCCATTTCCACTAAC 52701 Query 15996 AGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTG- 16054 | ||| || | ||| | ||| | ||||||||| | ||| ||| | || | | | Sbjct 52700 AACTGATTTAAAGTATTTTCTCTTTCATCATTACCGCCAATAAGTCCACCTCTACCTCGA 52641 Query 16055 -CTTTCCCACG-GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 16112 || | ||| |||||||| |||||||| || | || || || | || |||||| Sbjct 52640 GCTCTACCAATTGCATCAATTTCATCAATAAAAATTATACAAGGAGCAAGTTTGCGAGCT 52581 Query 16113 ACTTCAAAGAGATCCCGTACACG-CTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 16171 | |||| || |||| || || ||||| || ||||| ||||||||||||| ||||| Sbjct 52580 TGTGCAAAAAGGTCCCTGACGCGACTTGGA-CCAACACCCACAAACATCTCCATAAAGTC 52522 Query 16172 TGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAA 16230 || || | ||| | | ||| || || |||||| || ||| | || || |||| Sbjct 52521 TG-AGCCGCTCATAGTCAAGAAAGGAACGCCAGATTCTCCTGCAGTTGCCTTTGCAAGAA 52463 Query 16231 GAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCAC 16290 |||| || || || || || || | || |||||| || |||||||||||| Sbjct 52462 GAGTTTTGCCAGTTCCAGGAGGTCCATATAACAGTGCACCTTTCGGTATCTTGGCGCCAA 52403 Query 16291 TTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGG 16350 || | ||| | ||||| | ||| | ||| |||| |||| || ||| |||| Sbjct 52402 TTTCCTTGTAACGTTCAGGATTCTTCAAGTAATAAACAAACTCTATCACTTCGGTCTTGG 52343 Query 16351 CGGCGTCAATCCCCTCAACATCGGTAAA 16378 | | || | || ||||||| |||| Sbjct 52342 CTTCATCCAGTCCAGCAACATCTTTAAA 52315 >seq63 Length=104598 Score = 98.7 bits (108), Expect = 1e-15 Identities = 332/506 (66%), Gaps = 21/506 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| |||||||| || | | || | ||| | |||||| | ||||| ||| | Sbjct 58241 CGATCAAAACGACCTGGTCGTAACAAAGCCTTATCTAAGATATCCGCTCGATTGGTTCCA 58300 Query 15945 GCGATGACAACAATACCTGTTTC-GTTATCAAAACCATCCATCTCTGTCAA--AAGCTGG 16001 || | ||||||| |||||| | | | |||||||||||| ||| || |||| Sbjct 58301 GCAAATACAACAACACCTGTGGAAGATGT-AAAACCATCCATTTCTACTAATAAAGCA-- 58357 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTG--GCATA-CCACCAGCACTGCGTTGCTTT 16058 || | || | ||| | ||||||||| || ||| | ||||| || || | Sbjct 58358 TTGAGTGTATTTTCTCTTTCATCATTTCCTCCAGCAAAGCCACCTCGACCTCGAGCACGT 58417 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || || ||||| |||||||| || || || || ||| ||| | | ||| | || Sbjct 58418 CCAACAGCGTCAATTTCATCAATAAACACAATACAAGGTGCATTGGCTCTAGCTTGTGCA 58477 Query 16119 AAGAGATCCCGTACACG-CTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 16177 |||||||||| ||| || ||||| || ||||| |||||||| || | ||| | | Sbjct 58478 AAGAGATCCCTTACTCGACTTGG-ACCAACACCCACAAACATTTCAATAAAAT-----CC 58531 Query 16178 GGAACA-TTG----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | | || ||| | |||||| ||| ||| || || ||| | || ||||| | | Sbjct 58532 GAACCACTTGTCGAAAAGAAGGGAACACTAGCCTCTCCTGCAGTAGCCTTTGCGAGTAAA 58591 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTT 16292 ||||| || || || || ||| | | | ||||||| || | ||||| || | Sbjct 58592 GTCTTTCCTGTTCCAGGAGGACCAACCAACAAGGCACCTTTCGGGAGTTTGGCTCCTAAT 58651 Query 16293 CCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCG 16352 | | ||| |||| || | || | |||||| |||| || | ||| |||| || Sbjct 58652 CTACGATATTTCTCGGGCTTTTTTAAAAAATCAACAAATTCCATGATTTCTACTTTAGCT 58711 Query 16353 GCGTCAATCCCCTCAACATCGGTAAA 16378 |||| | ||| ||||||| |||| Sbjct 58712 TCGTCCAACCCAGCAACATCATTAAA 58737 >seq19 Length=190679 Score = 95.1 bits (104), Expect = 2e-14 Identities = 283/436 (65%), Gaps = 3/436 (1%) Strand=Plus/Plus Query 111601 TGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATA 111660 |||| ||| ||||| | ||||| ||| | || || | ||||| || ||| || Sbjct 25723 TGATAGAACGACCACAACATATGTTGATGAGAGTAGCTGTTGGTATTCACAAGGATGACT 25782 Query 111661 TTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACAC 111720 | || | || |||||||| || || | ||||| || || | || || ||| Sbjct 25783 TGGAAGCAGTATTGGAGACTTATGATTATATGTCTCGAAAATACTTTACTCATGCTTCAC 25842 Query 111721 CAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAA 111780 | || | ||||| || ||||| |||||||| || | ||| ||||||||| | | | Sbjct 25843 CTACTTTATTCAATGCGGGTACTCCAAGACCTCAGTTATCCTCTTGTTTCCTATTAACTA 25902 Query 111781 ACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAA 111840 | || || || || | || ||||| | ||| | | |||||| || || | Sbjct 25903 TGACTGAAGACTCCATTGAAGGAATTTATGATACTTTAAAAAGATGTGCAGTTATTTCTA 25962 Query 111841 AGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTA 111900 | | ||||||||||| || || | |||||| | | || | ||| ||| |||| Sbjct 25963 AAAGTGCTGGTGGTATTGGATTGGCAGTTCATGATATACGTGCAACCAAATCTTATATTC 26022 Query 111901 GAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 111960 ||||||| ||||| || |||| ||| |||| |||||||| |||||||| | || | Sbjct 26023 GAGGTACCAATGGAACTTCTAATGGCATTGTTCCTATGCTTCGAGTATTTAATGATACTG 26082 Query 111961 CGCGCTATGTAAACCAAGCTGGGCG---TCGCAAGGGATCTATCGCAGTCTATCTTGAGC 112017 | | ||||| | |||| || | | || ||| || | || | ||| | |||| Sbjct 26083 CAAGATATGTGGATCAAGGAGGAGGAAAAAGAAAAGGAGCTTTTGCTATTTATTTGGAGC 26142 Query 112018 CATGGCACGCGGATAT 112033 | ||||| || ||||| Sbjct 26143 CTTGGCATGCCGATAT 26158 >seq8 Length=268242 Score = 89.7 bits (98), Expect = 6e-13 Identities = 192/284 (68%), Gaps = 10/284 (4%) Strand=Plus/Plus Query 15971 ATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGC 16030 |||||| |||||||| || ||||| | ||| || | ||||||||| | |||||||||| | Sbjct 226440 ATCAAACCCATCCATTTCCGTCAATAACTGATTCAGAGTTTGTTCTCTTTCATCATTCCC 226499 Query 16031 TGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 | | | || |||| ||||| | || || || || || |||||||| || | || Sbjct 226500 TCCAGCAACTCCTGCACCTCGTTGTCTACCTACCGCGTCTATTTCATCAATAAAAATAAT 226559 Query 16091 GCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCA 16146 || || || |||| || ||| |||| | || || ||||| | || || | Sbjct 226560 ACACGGAGCATTCTTTTTGGCTTGCG----CAAATAAGTCACGAACACGACTAGCACCAA 226615 Query 16147 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGAT 16205 | ||||||||||| || ||||| | || | | | || | | ||| | || || | Sbjct 226616 CTCCAACAAACATTTCTACAAATTCTGAACCTGCA-ATAGAAAAGAAAGCAACTCCAGCT 226674 Query 16206 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||||| |||| |||| ||| | | |||||| || || || || Sbjct 226675 TCACCTGCAACTGCTCTGGCCAACAAAGTCTTTCCAGTTCCAGG 226718 >seq1 Length=465833 Score = 82.4 bits (90), Expect = 9e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 176887 AGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCG 176946 ||| || || | |||||| |||| || || || || || ||||| |||| || || Sbjct 42692 AGAAGCTTCTCTTACATTCAACAACTTGCCTCGTAGCGGAAAAACACCATAGTAGTCACG 42751 Query 176947 ACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGAT 177006 ||| || || || | ||||| ||| || || | |||||||||||| || ||||||| || Sbjct 42752 ACCTACTACTGATAAACCCGAAACTGCCAGTGCTTTCGCAGAATCTCCTTCTGTCAGAAT 42811 Query 177007 GAGTGTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAAT 177066 | ||||| | |||| || || || | |||||||||||||| || || || Sbjct 42812 CAAAGTACAGTAAAAGGATTCCTTTGTTCCAGCATAATTCGCATCATCCAACTTTGGTAT 42871 Query 177067 ACC 177069 ||| Sbjct 42872 ACC 42874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739040231760