Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq26 131 2e-25 seq6 111 2e-19 seq8 89.7 6e-13 >seq26 Length=183063 Score = 131 bits (144), Expect = 2e-25 Identities = 333/501 (66%), Gaps = 7/501 (1%) Strand=Plus/Plus Query 117291 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTT 117350 ||| ||||| || |||||||| ||||| |||||| | |||||||| || || | ||| Sbjct 77117 ACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGTCAATCCTGGCATAAGTCCTCTCTT 77176 Query 117351 CTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 117410 ||||||||| | || | || || || || || || || || ||||| ||| ||||| Sbjct 77177 TTTCAACCAAAATATGGAACAAAAAGAACCAGAAAAAAATATTCCCTCTACAGCAGCAAA 77236 Query 117411 CGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTT 117470 || | | ||||| || || ||| ||| | | | |||| | | ||||| | Sbjct 77237 TGCCACTAAACGCTCAGCAAAAGAGGCAGAGGATTGG---ATCCATCTTAAAGCCCACTG 77293 Query 117471 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAGA 117530 ||||| ||||||||||| || | | || || ||||||||||| | |||||| Sbjct 77294 AGCCTTTTTCTCAATACAAGGAATACGTTCCATTGCTTCAAATAAACGAGCCTTTTCTTG 77353 Query 117531 TCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTTCATT 117590 |||| ||| || | || || | ||||| ||||| ||||| |||| | Sbjct 77354 AGCATCTCGAATATAAGTATCGATAAGAAGAGAATAAGTTTCCGAATGAATATTTTCCAT 77413 Query 117591 ATGGCA-TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGCACTTCATCCGCAAAAT 117649 || | |||| || | || || | || ||||| ||||| || ||| | |||||| Sbjct 77414 -TGCTATTTGAAATCCATAAAAACATCGTGCTTCTGGAATCTGGACATCA-CGACAAAAT 77471 Query 117650 TGTTAT-TGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGTAC 117708 || | | ||||| ||||||||||| ||||| |||||||| |||| | || Sbjct 77472 CTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGATGCAAAGAAAGCCAATACGTGA 77531 Query 117709 TTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGGACAAA 117768 ||||| | |||| | |||||| ||||||| || || | || | || ||| Sbjct 77532 GAAATGAAATGGCGCTCATCTGCATTCAATTTCTTCCAATCTTCCAAGTCACTCGATAAA 77591 Query 117769 TCAACTTCTTCCGCAGTCCAA 117789 || | |||||| ||||||||| Sbjct 77592 TCTATTTCTTCAGCAGTCCAA 77612 >seq6 Length=291449 Score = 111 bits (122), Expect = 2e-19 Identities = 171/240 (71%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 9240 CGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTG 9297 ||||| || || || || |||| ||||| ||||| || | ||||| ||||| |||| Sbjct 227003 CGATTAGTTGCTGCAATAACAATGATACCATTGTTTGCTT--CGAAACCGTCCATTTCTG 227060 Query 9298 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACT 9355 | | | |||||| | ||||||||| | ||||||||| ||| ||| ||| || | Sbjct 227061 TAAGCAATTGGTTGAGAGTTTGTTCTCTTTCATCATTTCCGCCCGCAAT--ACCGGCTCC 227118 Query 9356 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG 9415 | |||| | || || ||||| || |||||||| || | |||||| || ||| | Sbjct 227119 TCTTTGCCTACCTACTGCATCTATTTCATCAATAAAAATAATACAAGGAGCATTCTTTTT 227178 Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||| | |||| | ||| ||||| | | ||||| ||||||||||||||||| ||||| Sbjct 227179 GGCTTGTGCAAATAAATCACGAACACGACTAGCGCCAACACCAACAAACATCTCAACAAA 227238 >seq8 Length=268242 Score = 89.7 bits (98), Expect = 6e-13 Identities = 192/284 (68%), Gaps = 10/284 (4%) Strand=Plus/Plus Query 9278 ATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGC 9337 |||||| |||||||| || ||||| | || || | ||||||||| | |||||||||| | Sbjct 226440 ATCAAACCCATCCATTTCCGTCAATAACTGATTCAGAGTTTGTTCTCTTTCATCATTCCC 226499 Query 9338 TGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAAT 9397 | | | || |||| ||||| | || || || || || |||||||| || | ||| Sbjct 226500 TCCAGCAACTCCTGCACCTCGTTGTCTACCTACCGCGTCTATTTCATCAATAAAAATAAT 226559 Query 9398 ACATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 ||| || || |||| || ||| |||| | || ||||| | | || || | Sbjct 226560 ACACGGAGCATTCTTTTTGGCTTGCG----CAAATAAGTCACGAACACGACTAGCACCAA 226615 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGAT 9512 | ||||||||||| || ||||| | || | | | || | | ||| | || || | Sbjct 226616 CTCCAACAAACATTTCTACAAATTCTGAACCTGCA-ATAGAAAAGAAAGCAACTCCAGCT 226674 Query 9513 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||||| |||| |||| ||| | | |||||| || || || || Sbjct 226675 TCACCTGCAACTGCTCTGGCCAACAAAGTCTTTCCAGTTCCAGG 226718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977606728920