Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq36 524 9e-144 >seq36 Length=158315 Score = 524 bits (580), Expect = 9e-144 Identities = 726/1013 (72%), Gaps = 4/1013 (0%) Strand=Plus/Plus Query 181410 CAAGGAGGGAATGGTTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTG 181469 ||| ||||| ||||| ||| | ||||||| ||||| ||||| || || ||||||||| Sbjct 39765 CAAAGAGGG--TGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTA 39822 Query 181470 TGGGCTGGTCTGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCA 181529 | || ||||| || | || |||||||| | | ||||| || | || | |||| | | Sbjct 39823 TTGGATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTA 39882 Query 181530 CTGGCACTACTTTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGG 181589 | || || ||||||||||| || ||||| || || || || || ||||| || | || | Sbjct 39883 CAGGTACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAG 39942 Query 181590 GTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTC 181649 | |||||| | || || || || |||| ||||| | |||||| || || || Sbjct 39943 GATGTAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTC-ATTA 40001 Query 181650 TTCTACTT-TGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGA 181708 || | || ||||| || |||||||| || ||||| | ||| ||| |||| || Sbjct 40002 TTATTTTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGT 40061 Query 181709 CTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAA 181768 || ||| ||||| || | || || || || || | || |||||| | | ||| Sbjct 40062 CTTTGGACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTTTGTTTGCGTCAA 40121 Query 181769 TTTGAACTTGCTCGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCT 181828 |||||| | || | || ||||||| | || |||||||| || |||||||| || || Sbjct 40122 TTTGAAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCA 40181 Query 181829 ATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTT 181888 ||||| || || || || |||||||| || ||||| || || ||| | |||||||| ||| Sbjct 40182 ATTGCAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTT 40241 Query 181889 GCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCAT 181948 || || ||||| || || || || || || || || || | || | || || || ||| Sbjct 40242 GCTCCTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCAT 40301 Query 181949 AATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTA 182008 |||||||| | ||||| || |||||||||||||||||||| || || || || |||||| Sbjct 40302 AATTGGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTA 40361 Query 182009 CTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCA 182068 || | ||| ||||| || | ||| || |||||||| | | |||| || || || Sbjct 40362 CTTTGTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCT 40421 Query 182069 AATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCG 182128 |||||||||| || || |||| ||| ||| ||||| |||||||||||||| || Sbjct 40422 AATACTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCT 40481 Query 182129 AACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTC 182188 || || || ||||| || || || ||| |||| ||| || || || ||| | ||||| Sbjct 40482 AATCGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTT 40541 Query 182189 TTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTT 182248 |||||||| ||||| || |||| || | |||||||| || || ||||| || || ||| Sbjct 40542 TTTATGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTT 40601 Query 182249 GCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCA 182308 || | || | ||||| ||||| ||||| || |||||| | | || |||| |||||| Sbjct 40602 GCATTAAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCCA 40661 Query 182309 GAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTA 182368 || || ||||| || || || || || | || | ||||||||| | | |||||| | Sbjct 40662 GAATTTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATG 40721 Query 182369 GCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACC 182421 ||| || |||||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 40722 GCAACACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACC 40774 Score = 405 bits (448), Expect = 6e-108 Identities = 662/951 (70%), Gaps = 2/951 (0%) Strand=Plus/Minus Query 179775 AACCGCCTCTATGTCGGTTGGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACT 179834 || || ||||| | |||||||| || || | ||||| || || | | |||| || Sbjct 27738 AATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACAGCTAC- 27680 Query 179835 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 179893 ||||| || || | | || || |||||||| || || || || || || || | || Sbjct 27679 ATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGA 27620 Query 179894 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTC 179953 ||| || | || ||| | | ||||| || || || || ||||||| |||| ||| | Sbjct 27619 ACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGTACCTAC 27560 Query 179954 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTG 180013 || || ||||| || | || |||||||| || |||||||| ||||| | || || || Sbjct 27559 ATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATG 27500 Query 180014 GCTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGC 180073 ||| ||||| || ||||||| || | | || || |||||| | ||||| || | ||| Sbjct 27499 GCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGC 27440 Query 180074 CTACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGT 180133 || ||||| ||||| |||||| | ||||| | || ||||| || ||||| ||| Sbjct 27439 ATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGT 27380 Query 180134 AGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCA 180193 ||| | || ||||| || |||||||| | |||||||| | |||||||| | || || Sbjct 27379 AGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTATTGGACA 27320 Query 180194 AGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGT 180253 |||| || || || | ||||| | || |||||||| || || || | ||| | || Sbjct 27319 AGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGT 27260 Query 180254 TTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGT 180313 ||||||||| || || || || | ||||| || || || ||| |||| || || ||||| Sbjct 27259 TTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGT 27200 Query 180314 CTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCG 180373 || || |||||| | || ||||||||||| || || || || || || | || Sbjct 27199 ATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACG 27140 Query 180374 TGAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGAC 180433 |||||| || || | |||||| ||| | ||||| || ||||| |||||| | || || Sbjct 27139 TGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATATGAAAC 27080 Query 180434 CTACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTT 180493 || |||||||||||||| ||||| || || || | | || ||||| |||||| || Sbjct 27079 TTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTT 27020 Query 180494 CAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTT 180553 || || || || ||| | || |||||| | || |||||| || || | || ||| | Sbjct 27019 TAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCT 26960 Query 180554 CACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 180613 ||| | | || | ||||| |||||||| ||| | || || || || || || || || Sbjct 26959 CACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAATCAATC 26900 Query 180614 CATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGG 180673 | ||||| |||||| | || | || |||||||| || | | || || || Sbjct 26899 TGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCGTGCAAA 26840 Query 180674 TCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 180724 | | || || ||||| ||||| || |||||||| || ||||| || || || Sbjct 26839 TTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGA 26789 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141255 TCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAATC 141314 |||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 28120 TCCTCAGTAGCTCAGCGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCAAATC 28179 Query 141315 CTACCTGGGGAGT 141327 ||||||| ||||| Sbjct 28180 CTACCTGAGGAGT 28192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610393496227320