Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq36 558 4e-154 >seq36 Length=158315 Score = 558 bits (618), Expect = 4e-154 Identities = 712/978 (73%), Gaps = 2/978 (0%) Strand=Plus/Minus Query 169436 TCTATGTTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT- 169494 |||| | ||||||||||| || ||||||| || ||||| ||||| || | ||| Sbjct 27731 TCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACAGCTACATC-TGTA 27673 Query 169495 TTCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTA 169554 || || ||| ||| || || || || || || ||||| ||||| || ||||||||||| Sbjct 27672 TTTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGAACCAGTT 27613 Query 169555 GCGGGTTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAAC 169614 | || || || || ||||| || || || || ||||||| |||| || |||| || Sbjct 27612 TCAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGTACCTACATCTAAT 27553 Query 169615 GCTATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTAT 169674 || || ||| |||| ||||| || || |||||||||||| || | ||||||||| | ||| Sbjct 27552 GCAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATGGCTATAT 27493 Query 169675 AATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATG 169734 ||||| ||||||||| | || || | || |||||| ||||||| || | ||||| ||| Sbjct 27492 AATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGCATATATG 27433 Query 169735 GGAAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATAC 169794 ||| | | |||||| || || | | ||||||||||||||||| || || | | Sbjct 27432 GGACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGTAGCTTTC 27373 Query 169795 TCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCA 169854 || || || || |||| || |||||||| | | || || |||| || ||| Sbjct 27372 TCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTATTGGACAAGGTAGT 27313 Query 169855 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAA 169914 || || |||||||||||| ||||||| || |||||||| || |||||||| ||||||||| Sbjct 27312 TTTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGTTTTCCAA 27253 Query 169915 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGA 169974 || || ||||| ||| |||||||||| || || ||| || || || || | || ||| Sbjct 27252 GCTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGTATTTGGA 27193 Query 169975 GGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACA 170034 || || ||||| |||||||| || || ||||| |||||| | | || | |||||| Sbjct 27192 GGTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACGTGAAACA 27133 Query 170035 ACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAAC 170094 |||||| | ||||| ||| |||||||||| || || |||||| | ||||| || ||| Sbjct 27132 ACAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATATGAAACTTATAAC 27073 Query 170095 ATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAAC 170154 || || || || || ||||| ||||| | | || ||||| ||||| || || || Sbjct 27072 ATCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTTTAATAAT 27013 Query 170155 TCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCT 170214 ||| | |||| |||||| |||| | | || || |||||| | ||| | || ||| Sbjct 27012 TCACGCTCATTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCTCACATCT 26953 Query 170215 ATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTT 170274 | |||||| ||||||||||||| ||||| ||||| || || ||||| ||||| |||||| Sbjct 26952 TTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAATCAATCTGTTGTT 26893 Query 170275 GATGCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGT 170334 ||| || | |||| | | | || |||| |||| || |||| | ||||| || || Sbjct 26892 GATTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCGTGCAAATTTAGGA 26833 Query 170335 ATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAG 170394 || ||||| ||||||||| | |||||||| ||||| || ||||| ||||| || | Sbjct 26832 ATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGATTTAGCAAGTGAAGTA 26773 Query 170395 TCTACACAGGTTGCTTTA 170412 ||| || ||||||||| Sbjct 26772 TCTTTACCAGTTGCTTTA 26755 Score = 491 bits (544), Expect = 5e-134 Identities = 738/1050 (70%), Gaps = 25/1050 (2%) Strand=Plus/Plus Query 170519 AAGGGGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGG 170578 ||| || ||||| || | |||| || ||| |||| | ||||| ||||| || || || Sbjct 39767 AAGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGG 39826 Query 170579 ATGGTCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGG 170638 |||||| ||| | ||||| | || ||| |||| ||| | | |||| ||||| ||| Sbjct 39827 ATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGG 39886 Query 170639 GACTACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATG 170698 || || || ||||| || |||||||| |||||| | ||||| || ||| | || ||||| Sbjct 39887 TACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATG 39946 Query 170699 TAACTTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCAT--AGTCTTCTG 170756 ||| || |||| || ||||| || | |||| | ||||| || | | || | Sbjct 39947 TAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCATTATTATT 40006 Query 170757 TTCCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTA 170816 || | |||||||| ||||| |||||| ||| | | |||| ||| | |||||| | Sbjct 40007 TT--TATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTT 40064 Query 170817 TGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTT 170876 |||| ||| || |||||||| | |||| | |||||||| | | |||||| Sbjct 40065 TGGACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTTTGTTTGCGTCAATTT 40124 Query 170877 GAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATC 170936 || || || || | || || || || || ||||| ||| | || || || | || Sbjct 40125 GAAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATT 40184 Query 170937 GCAGTCTTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCA 170996 ||||| || | | ||||| || |||||||| || || |||||||| || || Sbjct 40185 GCAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCT 40244 Query 170997 CCATCATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAAC 171056 || || || || ||||| || ||||| | ||| ||||| ||||||||||||| || Sbjct 40245 CCTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAAT 40304 Query 171057 ATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTA 171116 || || ||||||||||| |||||||||||||| |||||||| || ||||||||| | Sbjct 40305 TGGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTT 40364 Query 171117 TGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACT 171176 ||||| |||||||| || || || |||| ||||| | ||||| | | || Sbjct 40365 TGTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGA------TGGCGAAGCT 40418 Query 171177 GATAATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACT 171236 | |||| || ||| | || ||| || ||||| ||| |||||| Sbjct 40419 GCTAAT---------------ACTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACT 40463 Query 171237 TACAGTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAAC 171296 || ||| |||| || || | || |||||||| || |||||| |||| || |||||| Sbjct 40464 TATTCAATGGTTACGGCTAATCGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAAC 40523 Query 171297 AAAAGATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCT 171356 ||||||| |||| || ||||| | || || || || | || | |||||| ||| Sbjct 40524 AAAAGATGGCTACATTTTTTTATGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCT 40583 Query 171357 ATAGGTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATA 171416 || |||||| |||| || ||| | || | | ||||| |||||||| |||||||| || Sbjct 40584 ATTGGTATCATAGGACTTGCATTAAATTTACGTGCATATGATTTTGTCTCTCAAGAATTA 40643 Query 171417 AGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAA 171476 | || ||||| |||||||| || |||||||| || ||||| ||| ||||||| |||||| Sbjct 40644 CGTGCCGCAGAGGACCCAGAATTTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAA 40703 Query 171477 GGTATGAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAA 171536 ||||| |||||||||||| || || || ||||||||||| || || ||||||||||| Sbjct 40704 GGTATAAGAGCATGGATGGCAACACAAGATCAACCACATGAAAATTTTGTATTCCCAGAG 40763 Query 171537 GAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 || || |||||| | || || || |||||| Sbjct 40764 GAGGTTTTACCACGTGGAAATGCCCTTTAA 40793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579209665010720