Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq36 540 1e-148 >seq36 Length=158315 Score = 540 bits (598), Expect = 1e-148 Identities = 723/1003 (72%), Gaps = 2/1003 (0%) Strand=Plus/Plus Query 169298 AGGGGGTGGTTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGT 169357 || ||||||||||| | | ||||| ||||| ||||| || || ||||| || ||||| Sbjct 39768 AGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGGA 39827 Query 169358 TGGTCTGGTCTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGT 169417 ||||| ||| | || ||| |||| | | ||||| ||| | || | ||| | || ||| Sbjct 39828 TGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGGT 39887 Query 169418 ACAGCGTTTGTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCT 169477 ||| | ||||||||||| ||||| || || || | ||||| ||| |||||||| | Sbjct 39888 ACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATGT 39947 Query 169478 AACTTCCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTG 169537 || || | || ||||| || | ||||| | ||||||||||||| | | || Sbjct 39948 AATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCATTATTATTT 40007 Query 169538 CTATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGG 169597 ||||||| |||||||| ||||| ||||| | | ||||||||| | || ||||| ||| Sbjct 40008 TTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTTGG 40067 Query 169598 AACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGG-CAGTTTGA 169656 | ||| || | |||||||| ||||| ||||| ||||| || || | || ||||| Sbjct 40068 ACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTT-TGTTTGCGTCAATTTGA 40126 Query 169657 ATTGGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGC 169716 | | || | | | || || | || || ||||| || || || || || || ||||| Sbjct 40127 AATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATTGC 40186 Query 169717 TGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCC 169776 || ||||| || |||||||| || |||||||| || | ||||| |||||||| Sbjct 40187 AGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCTCC 40246 Query 169777 CTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTG 169836 |||||||| |||| ||||| | || | || || | ||||| ||||| || || Sbjct 40247 TAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAATTG 40306 Query 169837 GACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTC 169896 ||| || |||||||| || ||||||||||| || ||||| | || |||||||| |||| Sbjct 40307 GACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTTTG 40366 Query 169897 TGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATAC 169956 |||||| ||||| | || |||||||| ||||| | ||||| || || || ||||| Sbjct 40367 TGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTAATAC 40426 Query 169957 TTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCG 170016 ||||| ||| ||| | ||||| ||| || |||||||| ||||| || || || || Sbjct 40427 TTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTAATCG 40486 Query 170017 CTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCAT 170076 || ||||| || || || ||| |||| ||||||||||| | ||||| |||||||| || Sbjct 40487 TTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTTTTAT 40546 Query 170077 GTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCT 170136 | | |||||||| |||| || | |||||| ||||||||| || || || ||||| | Sbjct 40547 GCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTTGCATT 40606 Query 170137 CAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATT 170196 ||| | ||||| || ||||| || ||| || | | || ||||| || |||||||| Sbjct 40607 AAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCCAGAATT 40666 Query 170197 TGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACC 170256 |||||| || || || ||||| | || | |||||||| | | |||||| ||||| | Sbjct 40667 TGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATGGCAAC 40726 Query 170257 TGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTT 170299 ||||||||||||||||| || | |||||||| || ||| Sbjct 40727 ACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTT 40769 Score = 470 bits (520), Expect = 2e-127 Identities = 677/952 (71%), Gaps = 2/952 (0%) Strand=Plus/Minus Query 167890 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 167949 || || ||||| | |||||||| || ||| | ||||| || || | | |||| || Sbjct 27738 AATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACAGCTAC- 27680 Query 167950 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 168008 |||||| || || | | || | |||||||| || || || || ||||| || | || Sbjct 27679 ATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGA 27620 Query 168009 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTCCCTTC 168068 ||| || | || ||| | | ||||| || || || || ||||||| |||| ||| | Sbjct 27619 ACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGTACCTAC 27560 Query 168069 TTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTG 168128 |||||||| || ||| | || |||||||| || |||||||||||||| | ||||| || Sbjct 27559 ATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATG 27500 Query 168129 GTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGC 168188 | | ||||| || ||||||| || || |||| || |||||| | || || || | ||| Sbjct 27499 GCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGC 27440 Query 168189 ATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGATCTGTGT 168248 ||| |||||||||||||||||| | |||||| | || |||||||| ||||| || Sbjct 27439 ATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGT 27380 Query 168249 TGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTTTCGGTCA 168308 || | ||| || || || |||||||| | || ||||| | | |||||| | || || Sbjct 27379 AGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTATTGGACA 27320 Query 168309 AGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGT 168368 ||||||||| || |||| |||||| | || || || || || || || | ||||| || Sbjct 27319 AGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGT 27260 Query 168369 CTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGT 168428 ||||||||||| || |||||| | |||||||| || |||||| | || |||||||| || Sbjct 27259 TTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGT 27200 Query 168429 ATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAG 168488 |||||| || || |||||||| |||||||| | | || ||||| | | | | Sbjct 27199 ATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACG 27140 Query 168489 AGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAAC 168548 || || || || | || || |||| | ||||| || || || |||||| | ||||| Sbjct 27139 TGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATATGAAAC 27080 Query 168549 ATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 168608 || |||||||| || ||||||||||| || || | || || |||||||| || || Sbjct 27079 TTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTT 27020 Query 168609 CAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 168668 || || || ||||| || || |||||| | ||| |||||| || || | || ||| | Sbjct 27019 TAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCT 26960 Query 168669 CACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 168728 ||| | | || || ||| |||||||| ||| | || || || || || || || || Sbjct 26959 CACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAATCAATC 26900 Query 168729 CATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGG 168788 | ||||| ||| || | || | || || ||||| ||| || | || || || Sbjct 26899 TGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCGTGCAAA 26840 Query 168789 TCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAT 168840 | | || || ||||| |||||||| ||||| ||||| ||||| || || ||| Sbjct 26839 TTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGAT 26788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574470490661640