Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq36 522 3e-143 >seq36 Length=158315 Score = 522 bits (578), Expect = 3e-143 Identities = 719/1003 (72%), Gaps = 2/1003 (0%) Strand=Plus/Plus Query 165185 AGGGGGTGGTTCGATGTCCTCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGT 165244 || ||||||||||| | | ||||| ||||| ||||| ||||| || || ||| |||| Sbjct 39768 AGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGGA 39827 Query 165245 TGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGG 165304 ||||| || | || |||||||| | | ||||| ||| | || | ||| |||| || Sbjct 39828 TGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGGT 39887 Query 165305 ACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCA 165364 || ||||| | || ||||||||| || || || || ||| ||| | || || Sbjct 39888 ACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATGT 39947 Query 165365 AACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTT 165424 || ||| | || || ||||| || | ||| ||| | |||||| || || | | || Sbjct 39948 AATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCATTATTATTT 40007 Query 165425 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGG 165484 | ||||| || || |||||||| ||||| || ||| ||| |||| || || ||| Sbjct 40008 TTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTTGG 40067 Query 165485 GCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTT-CGTCAGTTTGA 165543 ||||| || | || || ||||| || | || ||||| || || ||||| ||||| Sbjct 40068 ACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTT-TTGTTTGCGTCAATTTGA 40126 Query 165544 ATTAGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGC 165603 | |||| | | |||| || | || |||||||| || || || || || || || || Sbjct 40127 AATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATTGC 40186 Query 165604 TGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 165663 ||||||||| || ||||| || || || || || ||| | ||||||||||| ||||| Sbjct 40187 AGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCTCC 40246 Query 165664 ATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTG 165723 ||| || || ||||| ||||| | || || | || ||||||| |||||||| || Sbjct 40247 TAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAATTG 40306 Query 165724 GACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTC 165783 ||| || ||||| |||||||||||||||||||| || || || || || ||||| |||| Sbjct 40307 GACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTTTG 40366 Query 165784 TGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATAC 165843 ||| || ||||| | || ||||||||||| | | ||||||| || | ||| ||||| Sbjct 40367 TGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTAATAC 40426 Query 165844 TTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCG 165903 ||||| ||| ||| | || ||| || ||||| || ||||||||||| || || || Sbjct 40427 TTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTAATCG 40486 Query 165904 TTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTAT 165963 ||| ||||| || || || ||| |||| ||| ||| || || ||| | ||||| ||||| Sbjct 40487 TTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTTTTAT 40546 Query 165964 GCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCT 166023 ||| ||||| || |||| || | |||||||| || || ||||| || || ||||| | Sbjct 40547 GCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTTGCATT 40606 Query 166024 CAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTT 166083 || | ||||| ||||| ||||| || ||||| | | || ||||| |||||||| || Sbjct 40607 AAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCCAGAATT 40666 Query 166084 TGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACC 166143 ||| || || || || ||||| | || | ||||||||| | | || ||| ||||| | Sbjct 40667 TGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATGGCAAC 40726 Query 166144 AGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTT 166186 | |||||||| ||||| || ||||| ||||| || || ||| Sbjct 40727 ACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTT 40769 Score = 475 bits (526), Expect = 4e-129 Identities = 689/970 (71%), Gaps = 2/970 (0%) Strand=Plus/Minus Query 163794 TGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCT 163853 ||| | ||| |||| | || || ||||| | |||||||| || || | ||||||||| Sbjct 27756 TGGATTACTAGCACAGAAAATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCT 27697 Query 163854 ACGCTGCTTGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 163912 || | || |||| || |||||| || || | | || | |||||||| || || || Sbjct 27696 ACATTACTAACAGCTAC-ATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGA 27638 Query 163913 CATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTC 163972 || || |||||| | ||||| ||| |||| || | | ||||| || || || || | Sbjct 27637 TATAGACGGTATTAGAGAACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAAC 27578 Query 163973 TGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGC 164032 |||||| |||| || | || |||||||| || | || ||||| || ||||||||||| Sbjct 27577 TGGTGCTATTGTACCTACATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGC 27518 Query 164033 CGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTT 164092 ||||| | ||||||||||| || || || ||||||| || | | || || ||||| Sbjct 27517 AGCATCTTTAGATGAATGGCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTT 27458 Query 164093 CCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTAT 164152 | | || || || | |||||| ||||| ||||| |||||| | || |||||||| || Sbjct 27457 CTTTATTGGAATTTGTGCATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAAT 27398 Query 164153 GCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCT 164212 |||||||||||| || |||| ||| || || ||||| ||||| | || || || | Sbjct 27397 GCGTCCTTGGATAGCCGTAGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTAT 27338 Query 164213 GGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCAC 164272 |||||||| | || |||||| || || || | ||||| | || || ||||| || Sbjct 27337 TATCTATCCTATTGGACAAGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTAC 27278 Query 164273 CTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATAT 164332 || || | ||||| || |||||||| || || || || | ||||| || || ||||| Sbjct 27277 TTTTAATTTTATGTTAGTTTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATAT 27218 Query 164333 GCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGT 164392 | | || |||||||| |||||||| ||||| | || |||||||||||||| ||||| || Sbjct 27217 GATGGGTGTTGCTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGT 27158 Query 164393 TACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTT 164452 ||||| || | |||||||| || || | |||||| ||| ||||||| || || Sbjct 27157 AACTTCAAGTTTGATACGTGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATT 27098 Query 164453 TGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGAT 164512 ||| |||||| | ||||| || ||||| ||||| ||||| ||||| ||||| | | || Sbjct 27097 TGGCCAAGAATATGAAACTTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAAT 27038 Query 164513 CTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCC 164572 |||||||| || || || || || || || || || |||||| | ||| |||||| Sbjct 27037 TTTCCAATATGCAAGCTTTAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGCC 26978 Query 164573 TGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGG 164632 || || | || ||| |||| | | ||| | ||| |||||||| ||| | || || Sbjct 26977 AGTAGTATGTATTTGGCTCACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGG 26918 Query 164633 TTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGA 164692 || || || || || || | | ||| ||| || | || | || |||||||| || Sbjct 26917 ATTTAATTTTAATCAATCTGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGA 26858 Query 164693 CGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTT 164752 || | || || || | | || || ||||| ||||| || ||||| || || ||||| Sbjct 26857 TATTTTAAATCGTGCAAATTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACTT 26798 Query 164753 CCCTCTGGAT 164762 ||||| ||| Sbjct 26797 TCCTCTAGAT 26788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556921785644520