Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq36 499 4e-136 >seq36 Length=158315 Score = 499 bits (552), Expect = 4e-136 Identities = 750/1058 (71%), Gaps = 32/1058 (3%) Strand=Plus/Plus Query 172941 AAGAGGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGG 173000 |||||| ||||| || | |||| || ||| |||| | ||||| || || || || || Sbjct 39767 AAGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGG 39826 Query 173001 ATGGTCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGG 173060 |||||| ||| | ||||| | || ||| | || || || | |||| ||||| ||| Sbjct 39827 ATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGG 39886 Query 173061 AACTACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGC 173120 || || || ||||| || |||||||| |||||| | || ||||| ||| | |||||| Sbjct 39887 TACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATG 39946 Query 173121 AAACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCAT--AGTCTTCTG 173178 || |||||||| || ||||| || | |||| | ||||| || | | || | Sbjct 39947 TAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCATTATTATT 40006 Query 173179 TTCCTTTGGGGACCTGAAGCACAAGGTTCATTCGTAC--GTTGGTTACAACTCGGAGGAC 173236 || | |||||||| ||||| |||||| || ||| | |||| ||| | ||||| | Sbjct 40007 TT--TATGGGGACCAGAAGCTCAAGGTGATTT--TACTAGATGGTGTCAAATTGGAGGTC 40062 Query 173237 TATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGT 173296 | |||| ||| || |||||||| | |||| | |||||||| | ||||| | Sbjct 40063 TTTGGACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTTTGTTTGCGTCAAT 40122 Query 173297 TTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTA 173356 |||| || || || | || || || || || ||||| ||| | || || || | | Sbjct 40123 TTGAAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAA 40182 Query 173357 TCGCAGTCTTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCG 173416 | ||||| || | | ||| | || || ||||| ||||| |||||||| || | Sbjct 40183 TTGCAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTG 40242 Query 173417 CACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACA 173476 | ||| || || || ||||| |||||||| | ||| ||||| ||||||||||||| | Sbjct 40243 CTCCTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATA 40302 Query 173477 ACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTAC 173536 | || || ||||||||||| |||||||||||||| |||||||| || |||||||||| Sbjct 40303 ATTGGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTAC 40362 Query 173537 TATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATA 173596 | ||||| |||||||| || || || |||| ||||| | |||| || Sbjct 40363 TTTGTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAG------------ATG 40410 Query 173597 CTGAAGGTAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAA 173656 |||| | | | ||| |||||||| || ||| || ||||| ||| |||| Sbjct 40411 GCGAAGCT--GCT--AAT-----ACTTTCAGGGCTTTTACACCAACACAATCAGAGGAAA 40461 Query 173657 CTTATAGTATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAA 173716 ||||| ||| |||| || || | || |||||||| || |||||| | |||||||| | Sbjct 40462 CTTATTCAATGGTTACGGCTAATCGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTA 40521 Query 173717 ACAAAAGATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCAT 173776 ||||||||| |||| || | ||| | || || || || | || | |||||| | Sbjct 40522 ACAAAAGATGGCTACATTTTTTTATGCTATTTGTGCCAGTTACAGGATTATGGACAAGCT 40581 Query 173777 CCATAGGTATCGTAGGTCTTGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAG 173835 | || |||||| |||| |||||| |||| ||| | ||||| || ||||| |||||||| Sbjct 40582 CTATTGGTATCATAGGACTTGCA-TTAAATTTACGTGCATATGATTTTGTCTCTCAAGAA 40640 Query 173836 ATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAAT 173895 || | || ||||| || ||||| || |||||||| || ||||| ||| ||||||| ||| Sbjct 40641 TTACGTGCCGCAGAGGACCCAGAATTTGAGACTTTTTATACTAAAAATTTACTTCTAAAT 40700 Query 173896 GAAGGTATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCA 173955 |||||||| |||||||||||| || | ||||||||||||||| || || ||||| ||| Sbjct 40701 GAAGGTATAAGAGCATGGATGGCAACACAAGATCAACCACATGAAAATTTTGTATTCCCA 40760 Query 173956 GAAGAAGTGTTACCAAGAGGTAACGCACTTTAAATAAT 173993 || || || |||||| | || || || |||| |||||| Sbjct 40761 GAGGAGGTTTTACCACGTGGAAATGCCCTTT-AATAAT 40797 Score = 466 bits (516), Expect = 2e-126 Identities = 687/970 (71%), Gaps = 2/970 (0%) Strand=Plus/Minus Query 171862 GGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTT 171921 |||||||| || ||| | |||||||| || || ||||| || | || || || Sbjct 27723 GGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACAGCTACATCTGTATTTATAATT 27664 Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 | ||| || || || || || || ||||| ||||| || |||||||||||| | || || Sbjct 27663 GGATTTATAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGAACCAGTTTCAGGATCA 27604 Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041 || |||||||| || || || || ||||||| |||| || |||| || |||||||| Sbjct 27603 TTGTTATATGGAAATAATATTATAACTGGTGCTATTGTACCTACATCTAATGCAATAGGA 27544 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | || ||||| ||||| |||||||||||| | ||||||||||| | || ||||| ||| Sbjct 27543 ATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATGGCTATATAATGGCGGT 27484 Query 172102 CCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAG 172161 |||||| | || || | || |||||| |||| || || | ||||| |||||| | | Sbjct 27483 CCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGCATATATGGGACGTGAA 27424 Query 172162 TGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCT 172221 |||||| || || | | || ||| | || |||||| ||||| | ||||| ||| Sbjct 27423 TGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGTAGCTTTCTCAGCTCCT 27364 Query 172222 GTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGAT 172281 || | ||||| ||||| || || | ||||| | || || ||| || || ||| Sbjct 27363 GTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTATTGGACAAGGTAGTTTTTCAGAT 27304 Query 172282 GGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCAT 172341 ||||||||| ||||||| || ||||| || || |||||||| || |||||||| || ||| Sbjct 27303 GGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGTTTTCCAAGCTGAACAT 27244 Query 172342 AACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTA 172401 || ||| |||||||||| || || ||| || || || || | |||||||| || ||| Sbjct 27243 AATATTTTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGTATTTGGAGGTTCATTA 27184 Query 172402 TTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCA 172461 || ||||||||||| ||| | || || || | | || | || ||||| || Sbjct 27183 TTTAGTGCAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACGTGAAACAACAGAGAAT 27124 Query 172462 GAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCA 172521 || || ||| | || || || || || |||||| | ||||| || ||||| || || Sbjct 27123 GAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATATGAAACTTATAACATCGTTGCT 27064 Query 172522 GCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGT 172581 || || ||||| ||||| | | || ||||| ||||| || || || ||| | Sbjct 27063 GCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTTTAATAATTCACGCTCA 27004 Query 172582 CTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATC 172641 | || |||||| |||| | | || || |||||| | ||| | || ||| | |||||| Sbjct 27003 TTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCTCACATCTTTAGGTATC 26944 Query 172642 TGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAAC 172701 | ||||||||||| ||| | || || || || || || ||||| ||||| ||| || | Sbjct 26943 AGCACAATGGCATTTAACTTAAATGGATTTAATTTTAATCAATCTGTTGTTGATTCTCAA 26884 Query 172702 GGTAAGATTG-TTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGT 172760 || |||| | || ||| |||| ||| || | || | ||||| |||| || ||||| Sbjct 26883 GG-AAGAGTAATTAATACTTGGGCTGATATTTTAAATCGTGCAAATTTAGGAATAGAAGT 26825 Query 172761 TATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTCTGCAGAGTCTTCAAC 172820 ||||||||| | |||||||| ||||| || |||| | || || || |||| | | Sbjct 26824 AATGCATGAACGTAATGCACATAACTTTCCTCTAGATTTAGCAAGTGAAGTATCTTTACC 26765 Query 172821 AGTTGCTTTA 172830 |||||||||| Sbjct 26764 AGTTGCTTTA 26755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588048017172880