Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq36 540 1e-148 >seq36 Length=158315 Score = 540 bits (598), Expect = 1e-148 Identities = 742/1032 (72%), Gaps = 4/1032 (0%) Strand=Plus/Plus Query 163611 AAGGGGGTGGTTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGG 163670 ||| |||||||| || | | ||||| ||||| || || ||||| || || |||||||| Sbjct 39767 AAGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGG 39826 Query 163671 TTGGTCTGGATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGG 163730 ||||| || || |||||| |||| | | ||| | || | |||| |||| |||| || Sbjct 39827 ATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGG 39886 Query 163731 TACAACTTTCGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGC 163790 ||||||||| ||||| || ||||| || ||||| | || |||| ||| | || || Sbjct 39887 TACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATG 39946 Query 163791 TAATTTTCTCACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCT 163850 ||||||| | || || || || |||| ||||| | |||||| || || | | | Sbjct 39947 TAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCATTATTATT 40006 Query 163851 TCTCTGGGGTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTG 163910 | | ||||| || || ||||| || ||||| | ||| ||| |||| || || || Sbjct 40007 TTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTTG 40066 Query 163911 GAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTT-CGGCAATTTG 163969 || |||| || | || || || ||||| | || ||||| || || || ||||||| Sbjct 40067 GACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTT-TTGTTTGCGTCAATTTG 40125 Query 163970 AACTTGCTCGCCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTG 164029 || | || | | | ||||| || || |||||||| || ||||| || || || |||| Sbjct 40126 AAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATTG 40185 Query 164030 CTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTC 164089 | || || ||| || ||||| || || || || || ||| | |||||||| || |||| Sbjct 40186 CAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCTC 40245 Query 164090 CATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACT 164149 | ||||||||| ||||| ||||| |||| | ||||| | ||||| || ||||| | Sbjct 40246 CTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAATT 40305 Query 164150 GGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTAT 164209 ||||||| || || || ||||||||||| |||||||| ||||| || |||||||| || | Sbjct 40306 GGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTTT 40365 Query 164210 CTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACA 164269 ||||||||| |||| || || || |||||||| | |||||||| ||| || || | Sbjct 40366 GTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTAATA 40425 Query 164270 CCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACC 164329 | || | ||| ||| | ||||| ||| || |||||||| ||||| || || || | Sbjct 40426 CTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTAATC 40485 Query 164330 GCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCA 164389 | || ||||| || || || |||||||| ||||||||||| | ||||| |||||||| | Sbjct 40486 GTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTTTTA 40545 Query 164390 TGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTC 164449 || | |||||||| |||| || |||||||| ||||||||| || || || ||||| Sbjct 40546 TGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTTGCAT 40605 Query 164450 TCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTA-GAGCAGCAGAAGATCCTGAG 164508 | ||| | ||||| || |||||||| |||||| |||| | || ||||| || || || Sbjct 40606 TAAATTTACGTGCATATGATTTTGTCTCTCAAGA-ATTACGTGCCGCAGAGGACCCAGAA 40664 Query 164509 TTCGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCA 164568 || |||||||| ||||| || || | | | || ||||| | | |||||| | ||| Sbjct 40665 TTTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATGGCA 40724 Query 164569 CCAGTTGACCAGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAAT 164628 || || || ||| ||| ||||| |||||||| || || | || | || ||| Sbjct 40725 ACACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAAT 40784 Query 164629 GCGCTTTAATAA 164640 || ||||||||| Sbjct 40785 GCCCTTTAATAA 40796 Score = 453 bits (502), Expect = 1e-122 Identities = 675/953 (71%), Gaps = 6/953 (1%) Strand=Plus/Minus Query 162412 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACC 162471 || || ||||| | |||||||| || ||| | ||||| || || | | |||| || Sbjct 27738 AATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACAGCTAC- 27680 Query 162472 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 162530 |||||| || || | | || | |||||||| || || || || ||||| || | || Sbjct 27679 ATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGA 27620 Query 162531 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATC 162590 ||| || | || ||| | | ||||| || || || || ||||||| |||| || | Sbjct 27619 ACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGTACCTAC 27560 Query 162591 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 162650 || || ||||| || | || |||||||| || |||||||| ||||| | ||||| || Sbjct 27559 ATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATG 27500 Query 162651 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGC 162710 ||| ||||| || ||||||| || | |||| || |||||| | || || || | ||| Sbjct 27499 GCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGC 27440 Query 162711 CTACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCGT 162770 || |||||||||||||||||| | || |||||||| |||||||| ||||| ||| Sbjct 27439 ATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGT 27380 Query 162771 AGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCA 162830 ||| | ||| || |||||||| ||||| | || || || | |||||||| | || || Sbjct 27379 AGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTATTGGACA 27320 Query 162831 AGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGT 162890 |||| ||| || || | ||||| || ||||| |||||| || || | ||| | || Sbjct 27319 AGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGT 27260 Query 162891 CTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGT 162950 |||||||| || || || ||| | |||||||| || || ||| ||||||| || ||||| Sbjct 27259 TTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGT 27200 Query 162951 CTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCG 163010 || || |||||| | || |||||||||||||| ||| | || || || | | || Sbjct 27199 ATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACG 27140 Query 163011 TGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 163070 ||| || || || | |||||| ||| ||||||| || || || |||||| | || || Sbjct 27139 TGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATATGAAAC 27080 Query 163071 ATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATT 163130 || |||||||| || || |||||||| || || | || || |||||||||||| || Sbjct 27079 TTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTT 27020 Query 163131 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTT 163190 || || || || || || || |||||| | ||| |||||| || || | || ||| | Sbjct 27019 TAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCT 26960 Query 163191 CACCGCCCTTGGCGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 163248 ||| ||| || ||| || |||||||| ||| | || || || || || || || Sbjct 26959 CAC--ATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAATCAA 26902 Query 163249 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCA 163308 || | ||||| ||| || | || | || || ||||| || || | || |||||| Sbjct 26901 TCTGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCGTGCA 26842 Query 163309 GGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGA 163361 ||| || || ||||| ||||| || || ||||| || ||||| || || || Sbjct 26841 AATTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGA 26789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557580982076600