Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq36 535 5e-147 >seq36 Length=158315 Score = 535 bits (592), Expect = 5e-147 Identities = 736/1024 (72%), Gaps = 4/1024 (0%) Strand=Plus/Plus Query 168474 AGGGGGTGGTTCGATGTCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGT 168533 || ||||||||||| | | ||||| ||||| ||||| ||||| || || ||| |||| Sbjct 39768 AGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGGA 39827 Query 168534 TGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGG 168593 ||||| || | || |||||||| | | ||||| ||| | || | ||| |||| || Sbjct 39828 TGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGGT 39887 Query 168594 ACTGCTTTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCA 168653 || |||| || || ||||||||| || || || || ||| ||| | || || Sbjct 39888 ACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATGT 39947 Query 168654 AACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTT 168713 || ||| | || || ||||| | ||| ||| || |||||| || || | | || Sbjct 39948 AATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCATTATTATTT 40007 Query 168714 CTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGG 168773 | ||||| || || || ||||| ||||| |||||||||||| ||||||| || ||| Sbjct 40008 TTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTTGG 40067 Query 168774 GCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTT-CGTCAGTTTGA 168832 ||||| || | || || ||||| || | || ||||| || || ||||| ||||| Sbjct 40068 ACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTT-TTGTTTGCGTCAATTTGA 40126 Query 168833 ACTGGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGC 168892 | | || | | |||| || | || |||||||| || || || || || || || || Sbjct 40127 AATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATTGC 40186 Query 168893 TGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 168952 ||||||||| || ||||| || || || || || ||| | ||||||||||| ||||| Sbjct 40187 AGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCTCC 40246 Query 168953 ATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTG 169012 ||| || || |||| ||||| ||||| || | || ||||||| |||||||| || Sbjct 40247 TAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAATTG 40306 Query 169013 GACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTC 169072 ||| | ||||||||||||||||||||||| || || || | |||||||| || |||| Sbjct 40307 GACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTTTG 40366 Query 169073 TGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATAC 169132 ||| |||||||| | || ||||||||||| | | ||||||| ||| || ||||| Sbjct 40367 TGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTAATAC 40426 Query 169133 TTTCAAAGCATTTGACAGC-ACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACC 169191 ||||| || ||| ||| | || || |||||| || |||||||||||||| || || | Sbjct 40427 TTTCAGGGC-TTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTAATC 40485 Query 169192 GTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTA 169251 |||| ||||| || || |||||| |||| || ||| || || ||| | ||||| |||| Sbjct 40486 GTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTTTTA 40545 Query 169252 TGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTC 169311 |||| ||||| || |||| || | |||||||| || || ||||| || || ||||| Sbjct 40546 TGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTTGCAT 40605 Query 169312 TCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGT 169371 | || | ||||| ||||| ||||| || ||||| | | || ||||| || ||||| | Sbjct 40606 TAAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCCAGAAT 40665 Query 169372 TTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCAC 169431 ||||||| || || || || || | || | || |||||| | | |||||| | ||| Sbjct 40666 TTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATGGCAA 40725 Query 169432 CTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATG 169491 | |||||||| ||||| || ||||| ||||| ||||| || | || || || |||| Sbjct 40726 CACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATG 40785 Query 169492 CCCT 169495 |||| Sbjct 40786 CCCT 40789 Score = 455 bits (504), Expect = 4e-123 Identities = 591/814 (73%), Gaps = 2/814 (0%) Strand=Plus/Minus Query 167079 TGGGAATCCTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTC 167138 |||||| ||||| |||| |||| ||||| | || ||||| || | |||||||| Sbjct 27774 TGGGAACGTTTTTGTTCTTGGATTACTAGCACAGAAAATCGTCTCTACATAGGTTGGTTT 27715 Query 167139 GGCGTTCTGATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGT 167197 || || | ||||||||||| || || |||| || |||||| || || || | || | Sbjct 27714 GGAGTATTAATGATCCCTACATTACTAACAGCTAC-ATCTGTATTTATAATTGGATTTAT 27656 Query 167198 CGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTA 167257 | |||||| || || || || || ||||| | ||||||||| | || ||| | | || Sbjct 27655 AGCTGCTCCACCAGTTGATATAGACGGTATTAGAGAACCAGTTTCAGGATCATTGTTATA 27596 Query 167258 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTT 167317 ||| || || || || ||||||| |||| ||| | |||||||| || || | || || Sbjct 27595 TGGAAATAATATTATAACTGGTGCTATTGTACCTACATCTAATGCAATAGGAATACATTT 27536 Query 167318 CTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCA 167377 |||||| || |||||||||||| | | || || ||| | || ||||| ||||||| | Sbjct 27535 CTATCCTATTTGGGAAGCAGCATCTTTAGATGAATGGCTATATAATGGCGGTCCTTATGA 27476 Query 167378 ACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACT 167437 | | ||||||| |||||| | ||||| || | ||| |||||||| ||||| |||||| | Sbjct 27475 ATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGCATATATGGGACGTGAATGGGAATT 27416 Query 167438 CTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGC 167497 || ||||| || |||||||| ||||| || || | ||| ||||| || ||||| Sbjct 27415 AAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGTAGCTTTCTCAGCTCCTGTTGCTGC 27356 Query 167498 AGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCC 167557 ||| | |||||||| | |||||||| | || |||||| ||| || || | ||||| Sbjct 27355 AGCCACAGCTGTATTTATTATCTATCCTATTGGACAAGGTAGTTTTTCAGATGGTATGCC 27296 Query 167558 TCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 167617 | ||||| |||||||| || || | ||| | || |||||||| || || || || | Sbjct 27295 ATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGTTTTCCAAGCTGAACATAATATTTT 27236 Query 167618 GATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGC 167677 ||||| || || |||||| | || |||||||| ||||| || ||||| | || ||||| Sbjct 27235 AATGCATCCGTTTCATATGATGGGTGTTGCTGGTGTATTTGGAGGTTCATTATTTAGTGC 27176 Query 167678 AATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCA 167737 ||||||||| ||||| || || || || | |||||||| || || | |||||| Sbjct 27175 AATGCACGGCTCTCTTGTAACTTCAAGTTTGATACGTGAAACAACAGAGAATGAGTCTGC 27116 Query 167738 GAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGG 167797 ||| ||||||| || || || || ||| | || || ||||||||||| ||||||||||| Sbjct 27115 AAACAATGGTTATAAATTTGGCCAAGAATATGAAACTTATAACATCGTTGCTGCTCATGG 27056 Query 167798 TTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTT 167857 ||| || || | | || |||||||| ||| ||| || || || ||||| | || || Sbjct 27055 TTATTTTGGAAGATTAATTTTCCAATATGCAAGCTTTAATAATTCACGCTCATTACATTT 26996 Query 167858 CTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGG 167891 |||||| || |||||| || || |||| ||| Sbjct 26995 CTTCTTAGCTTTATGGCCAGTAGTATGTATTTGG 26962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560604965709200