Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq36 545 3e-150 >seq36 Length=158315 Score = 545 bits (604), Expect = 3e-150 Identities = 715/986 (73%), Gaps = 12/986 (1%) Strand=Plus/Minus Query 169698 TTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCC 169757 |||| | || |||||| | || || |||| | |||||||| || || || |||||||| Sbjct 27757 TTGGATTACTAGCACAGAAAATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCC 27698 Query 169758 ATGTCTATTAGCAGCAGCAAC--CTGC-TTTATCGTTGCTTTCATCGCAGCTCCACCTGT 169814 | |||| | |||| || ||| ||||| ||| || || || |||||||| || Sbjct 27697 ---TACATTACTAACAGCTACATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGT 27641 Query 169815 GGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCAT 169874 || || || || || |||||||| || |||| ||||| | ||||| || || || || Sbjct 27640 TGATATAGACGGTATTAGAGAACCAGTTTCAGGATCATTGTTATATGGAAATAATATTAT 27581 Query 169875 CTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGA 169934 ||||||| |||| || | || || ||||| || | || ||||||||||||||||| Sbjct 27580 AACTGGTGCTATTGTACCTACATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGA 27521 Query 169935 AGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCA 169994 ||||||| || ||||||| ||| | ||||| || ||||||||| ||||| | | || || Sbjct 27520 AGCAGCATCTTTAGATGAATGGCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCA 27461 Query 169995 CTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGG 170054 |||| |||| ||||| | ||| || ||||| | | |||||| || || ||| | || Sbjct 27460 CTTCTTTATTGGAATTTGTGCATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGG 27401 Query 170055 TATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATT 170114 |||||||||||||| ||||| | || ||||| || | ||||| |||||||| Sbjct 27400 AATGCGTCCTTGGATAGCCGTAGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATT 27341 Query 170115 CTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGG 170174 | | |||||| | || || || ||| ||||| || ||||| ||||||| || || Sbjct 27340 TATTATCTATCCTATTGGACAAGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGG 27281 Query 170175 TACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCA 170234 ||| ||||| || ||||| || |||||||| || || || ||| | ||||| || || || Sbjct 27280 TACTTTTAATTTTATGTTAGTTTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCA 27221 Query 170235 TATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACT 170294 |||| || ||||||||| | || ||||| || | || ||||||||||| || || Sbjct 27220 TATGATGGGTGTTGCTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCT 27161 Query 170295 TGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAA 170354 |||||| || | | || | || |||||||| || ||||| ||| |||| || || Sbjct 27160 TGTAACTTCAAGTTTGATACGTGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAA 27101 Query 170355 ATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACT 170414 ||| || |||||| | ||||| || ||||| ||||| || ||||| || ||||| ||| | Sbjct 27100 ATTTGGCCAAGAATATGAAACTTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATT 27041 Query 170415 TATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATT 170474 || ||||||||||| |||||||| ||| || | || |||||| | ||| || Sbjct 27040 AATTTTCCAATATGCAAGCTTTAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATG 26981 Query 170475 CCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAA 170534 || |||||||| || ||| | || || | ||||| ||||||||||||||||| | || Sbjct 26980 GCCAGTAGTATGTATTTGGCTCACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAA 26921 Query 170535 TGGATTTAACTTCAACCAGTCAATCGTAGATGGATCT---GGTAAAGTAGTTCCTACATG 170591 ||||||||| || || || || | || ||| ||| || | |||| || ||| || Sbjct 26920 TGGATTTAATTTTAATCAATCTGTTGTTGAT---TCTCAAGGAAGAGTAATTAATACTTG 26864 Query 170592 GGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACA 170651 ||| || || | || | ||||| |||| || |||||||||||||| ||||||||||| Sbjct 26863 GGCTGATATTTTAAATCGTGCAAATTTAGGAATAGAAGTAATGCATGAACGTAATGCACA 26804 Query 170652 CAACTTCCCACTTGACTTGGCAACTG 170677 ||||| || || || || |||| || Sbjct 26803 TAACTTTCCTCTAGATTTAGCAAGTG 26778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582844845335200