Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq54 190 5e-43 seq9 172 1e-37 seq6 149 1e-30 >seq54 Length=107229 Score = 190 bits (210), Expect = 5e-43 Identities = 176/223 (79%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | ||| || | ||||||||| |||||||| |||||||| || || | ||||| Sbjct 11022 TCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGT 11081 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| || || ||||| || ||||| | ||||||||||| |||||||| || Sbjct 11082 ACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCC 11141 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||| || ||| ||||||||||||||| || || ||| ||| |||||||| Sbjct 11142 TTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAG 11201 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| ||||||||||| | |||||| || || | ||||||| Sbjct 11202 AGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11244 Score = 185 bits (204), Expect = 2e-41 Identities = 164/205 (80%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| |||||||| |||||||| || || | ||||| | || ||||| || || Sbjct 11268 GTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTG 11327 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || ||||| | ||||||||||| |||||||| |||||||| ||||| || || Sbjct 11328 TTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTT 11387 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||||||||||||||| || || ||| ||| |||||||| |||| ||||||||||| Sbjct 11388 TGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGT 11447 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | |||||| || || | ||||||| Sbjct 11448 AAGAGTTTTCACAAAGATTTGCATT 11472 Score = 181 bits (200), Expect = 2e-40 Identities = 163/205 (80%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||| || |||||||| || || | ||||| | || ||||| || || Sbjct 11724 GTGAAGAGTTGACTCCTTCTGAATATTATAGTCCGATAGAGTACGACCGTCTTCAAGTTG 11783 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || ||||| | ||||||||||| |||||||| |||||||| ||||| || || Sbjct 11784 TTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAGGAATTCCTTCTTTATCTTGTATCTT 11843 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||||||||||||||| || || ||| ||| |||||||| |||| ||||||||||| Sbjct 11844 TGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGT 11903 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | |||||| || || | ||||||| Sbjct 11904 AAGAGTTTTCACAAAGATTTGCATT 11928 Score = 176 bits (194), Expect = 1e-38 Identities = 162/205 (79%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||| || |||||||| || || | ||||| | || ||||| || || Sbjct 11496 GTGAAGAGTTGACTCCTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTG 11555 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || ||||| | ||||||||||| |||||||| |||||||| ||||| || || Sbjct 11556 TTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTT 11615 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||| |||||||| || || ||| ||| |||||||| |||| ||||||||||| Sbjct 11616 TGACTTGACATTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGT 11675 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | |||||| || || | ||||||| Sbjct 11676 AAGAGTTTTCACAAAGATTTGCATT 11700 >seq9 Length=249065 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||| || |||||||||||||||||||| || | | ||| | ||||| Sbjct 144164 CAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGACAAAGTACGGCCATC 144105 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||| ||||| || || || | |||||||||||||| ||||||||||| ||||| Sbjct 144104 TTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTGTC 144045 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || ||||||||| ||||| || || || ||| |||||||| |||| || Sbjct 144044 TTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGT 143985 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| || || | ||| || || || | |||||||| Sbjct 143984 CTTCCCAGTGAGAGTCTTCACAAATATTTGCATTT 143950 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||| || ||||||||||||||||| || || | | ||| | ||||| Sbjct 144392 CAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATC 144333 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||| ||||| || || || | |||||||||||||| ||||| ||||| ||||| Sbjct 144332 TTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTC 144273 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || ||||||||| ||||| || || || ||| |||||||| |||| || Sbjct 144272 TTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGT 144213 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | ||| || || || | |||||| Sbjct 144212 CTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 144180 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||| || ||||||||||||||||| || || | | ||| | ||||| Sbjct 144620 CAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCATC 144561 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||| ||||| || || || | |||||||||||||| ||||| ||||| ||||| Sbjct 144560 TTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGTC 144501 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || |||||| || ||||| || || || ||| |||||||| |||| || Sbjct 144500 TTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATAGT 144441 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | ||| || || || | ||||| Sbjct 144440 CTTCCCAGTGAGAGTCTTCACAAATATCTGCAT 144408 >seq6 Length=291449 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 |||||||| | || | ||| |||||||| || ||||| ||||| | ||| ||||| || Sbjct 274533 CTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCAGAAAGCGTTCTTCCG 274474 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 ||||| | |||||| || || || ||||||| ||||| ||||||||||| |||||||| Sbjct 274473 TCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGAGGAATACCTTCTTTA 274414 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105 |||||||| || || || || || || || || ||| ||| ||||| | || | Sbjct 274413 TCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCAACTTCCAATGTTATG 274354 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| ||||| || || | |||||| Sbjct 274353 GTTTTTCCAGTCAACGTTTTCACAAATATTTGCAT 274319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109475444804111