Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq9 123 2e-23 seq6 109 4e-19 seq54 98.7 6e-16 >seq9 Length=249065 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||||||||| | ||| |||||||||| || ||||| ||||| |||||||| || Sbjct 144635 TCCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGA 144576 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 | | || |||| |||| |||||| || ||||| || | ||||| |||||| | || Sbjct 144575 CAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGG 144516 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || |||||||| |||||| ||||| | | || | || || ||||| Sbjct 144515 AATACCTTCCTTGTCTTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAAC 144456 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || || || || ||||||||||||||||| |||||||| Sbjct 144455 TTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATCTGCAT 144408 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | ||| |||||||||| || ||||| ||||| |||||||| || Sbjct 144406 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGAC 144347 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| |||| |||||| || ||||| || | ||||| |||||| | || Sbjct 144346 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144287 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| |||||| |||||| | | || | || || ||||| Sbjct 144286 ATACCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACT 144227 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || || || || || ||||||||||||||||| || ||||| Sbjct 144226 TCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 144180 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | ||| |||||||||| || ||||| ||||| || ||||| || Sbjct 144178 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGAC 144119 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| |||| |||||| || ||||| || | ||||| |||||| | || Sbjct 144118 AAAGTACGGCCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144059 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| |||||| |||||| | | || | || || ||||| Sbjct 144058 ATGCCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACT 143999 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | || || || || || ||||||||||||||||| || ||||| || Sbjct 143998 TCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCATTTT 143949 >seq6 Length=291449 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || |||||||||||||| || | || |||||||| || ||||| || ||| Sbjct 274545 CCTCCTCTTAACCTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCAGAA 274486 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | | || |||| ||| ||||||||||| || |||| || || ||| | || Sbjct 274485 AGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGAGGA 274426 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || |||||| ||| || | | || | ||| | ||||| Sbjct 274425 ATACCTTCTTTATCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCAACT 274366 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | |||||||||||||| || | || |||||||| || |||||| Sbjct 274365 TCCAATGTTATGGTTTTTCCAGTCAACGTTTTCACAAATATTTGCATA 274318 >seq54 Length=107229 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||||||||| | || |||||||||| || ||||||||||| |||||||| | Sbjct 11243 TTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTG 11302 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | || | || || || ||||| || ||||| |||| ||||| ||||| | | Sbjct 11303 ATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAG 11362 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || || || ||||| |||||| | || | ||| | || | Sbjct 11363 GAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTA 11422 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || || ||||| || ||||| ||||||||||| ||||| Sbjct 11423 CTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11471 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||||||||| | || |||||||||| || || |||||||| |||||||||| Sbjct 11699 TTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCCG 11758 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | || | || || || ||||| || ||||| |||| ||||| ||||| | | Sbjct 11759 ATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAG 11818 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || || || ||||| |||||| | || | ||| | || | Sbjct 11819 GAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTA 11878 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || || ||||| || ||||| ||||||||||| ||||| Sbjct 11879 CTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11927 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || ||||| |||| | ||| |||||||||| || ||||||||||| |||||||| Sbjct 11014 TTACCTCCTCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCT 11073 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || || | || | || || || ||||| || ||||| |||| ||||| ||||| | Sbjct 11074 GATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGA 11133 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | || || || || ||||| |||||| | || | ||| | || Sbjct 11134 GGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCT 11193 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || || || ||||| || ||||| ||||||||||| ||||| Sbjct 11194 ACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11243 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||||||||| | || |||||||||| || || |||||||| |||||||| | Sbjct 11471 TTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCTG 11530 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | || | || || || ||||| || ||||| |||| ||||| ||||| | | Sbjct 11531 ATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAG 11590 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | || || || || ||||| ||||| || || || | ||| | || Sbjct 11591 GAATTCCTTCTTTATCTTGTATCTTTGACTTGAC--ATTCTCAATAGTATCAGAAGGTTC 11648 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || || || ||||| || ||||| ||||||||||| ||||| Sbjct 11649 TACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631886847624