Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq62 297 2e-75 seq26 233 2e-56 seq19 217 2e-51 >seq62 Length=89227 Score = 297 bits (328), Expect = 2e-75 Identities = 420/587 (72%), Gaps = 9/587 (2%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| |||||||| | || || |||| |||||| ||||| || || || | | Sbjct 48132 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAGAAAGTAAGA 48191 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||||||||| || | ||| |||||||| ||||| ||| ||| || |||||||||||| Sbjct 48192 CCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAACCAGAAAAGAAT 48251 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||||||||||||||| ||||||| | || || |||| || | || | Sbjct 48252 ATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAACT-GCTGGAACATCGT-- 48308 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 |||||||| | | |||||| || |||||||| ||||| | | | || || | | Sbjct 48309 ATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTTTCGATGGCGTAG 48368 Query 19201 AATAGATACATACGCTCATCTG---TATCTTTAACATATGCATCTATCAATAAACTGTAC 19257 || | | ||||| |||| ||||| || ||| | ||| || | |||| |||| Sbjct 48369 AACAAACG---ACGCTTTTCTGCCATATCTCGAATATAAGTATCGATAAGTAAAGCGTAC 48425 Query 19258 ATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTT 19317 ||||| ||||| | |||||| |||||||||||||| || || ||||| | ||||| | | Sbjct 48426 ATTTCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACGCGCTTCGGGT 48485 Query 19318 ATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCT 19377 | || |||||| ||| ||| | | |||| |||||||| || || |||||| |||| Sbjct 48486 ACTTGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCATTCACGATGCCATCAGAAGCT 48545 Query 19378 GCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAA 19437 ||||||||||| || ||||| ||||| |||| || ||| | | ||||||| Sbjct 48546 GCAAAAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGATGAATGGAGAGAATTCCAA 48605 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 || | ||||| |||| || ||||||||||||||||| ||| ||| || || | Sbjct 48606 TCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAACTAGCTTCCGCACGT 48665 Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||||| | | |||||| | | |||| ||| ||||||| |||||| Sbjct 48666 TTATATAATTCCCATATTTGCCTATATCTTATGGGAAATAAAACAAA 48712 >seq26 Length=183063 Score = 233 bits (258), Expect = 2e-56 Identities = 375/535 (70%), Gaps = 9/535 (2%) Strand=Plus/Plus Query 18958 AAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTT 19017 ||||||||||| |||||||| | || || || | || | |||||||| || || Sbjct 77094 AAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGTC 77153 Query 19018 AAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAG 19077 || || ||||| |||||||| ||||| ||||| ||||| ||| ||| || |||||||| Sbjct 77154 AATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAAA 77213 Query 19078 AATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTA 19137 ||||| || ||||| || ||||| || |||| | || || || ||| | ||| Sbjct 77214 AATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCAG-AGGATT- 77271 Query 19138 TGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAA 19197 | |||||| | | ||||| | |||||| || | | ||| || || || || | Sbjct 77272 -GGATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGCT 77330 Query 19198 TTAAATAGATACATACGCTCATCT---GTATCTTTAACATATGCATCTATCAATAAACTG 19254 | ||||| | | || ||| | |||| || ||| | ||| || | | | Sbjct 77331 TCAAATAAACG---AGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAA 77387 Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 || |||| |||||||||||||| || || || |||||||| |||||||||| ||||||| Sbjct 77388 TAAGTTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCT 77447 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | ||||| || |||| |||||||||||| | | || || ||| ||||| || | Sbjct 77448 GGAATCTGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAA 77507 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTC 19434 | |||||| || || ||||| || ||| ||||| ||||||| | ||| | ||| Sbjct 77508 GATGCAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATTTCTTC 77567 Query 19435 CAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCT 19489 ||||| | | || | |||||||||| ||||||| | |||||||||||||||| Sbjct 77568 CAATCTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGAAGCCT 77622 Score = 86.0 bits (94), Expect = 7e-12 Identities = 186/275 (68%), Gaps = 5/275 (2%) Strand=Plus/Plus Query 18614 AAAAATCAACATCCAAAGAAAAAGAATTCTCTTC---ATTAGAATTCATTACTCCCATTT 18670 ||||||| |||||||| ||| | | |||| | || |||| ||| || | Sbjct 76698 AAAAATCTGCATCCAAACGAAACTCTTGCGCTTCTCCACTATCGTTCACTACACCAGCCT 76757 Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||| | |||| || ||||| || || || ||||| || || || || || Sbjct 76758 TTTGATATTCTCCCACTCGCTTCTCAAAAAAGTTGGTCTTTCCTTCCAAAGAAATGAGTT 76817 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGA-ATCCTAATTCTAATAGT 18789 |||| ||||||| |||||| | | | | || ||| | | |||| || | | | Sbjct 76818 CCATCCAATCAAACGGATTTCG-AGACTGGAAATATTTCTCATATCCCAAAGCAACCAAC 76876 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | | |||||| ||||| | |||||| |||||||||||| |||||||||||| ||| Sbjct 76877 AAACGATCCGCAACAAACTCAATATACTGACTCATCATATCACTATTCATTCCTATCAAT 76936 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTC 18884 || |||| || || || ||| |||| ||| Sbjct 76937 GCTACCGGTAATGACTCACAAATAAACTCTTTTTC 76971 >seq19 Length=190679 Score = 217 bits (240), Expect = 2e-51 Identities = 473/703 (67%), Gaps = 4/703 (1%) Strand=Plus/Minus Query 48126 TCAAATTCATC-CCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 |||||| | || ||| ||| || | | || || ||| |||||| ||||| | || Sbjct 26338 TCAAATGCTTCACCCCAACA-ATCAGCCAAACCTGGAGCTTCATTGGGACAAAATAAACT 26280 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| | |||||| |||| |||||| ||||||||| ||| || | ||| | | | ||| Sbjct 26279 CCATTTCTCATCCTTTTCTACTCTTTTCATAAATAAATCGGGAACCCATAAACCATAAAA 26220 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 ||||| | | || |||||| || ||| |||| || | | || | ||| || | Sbjct 26219 CAAATCTCGTGCTCGATTTTCTTCCTTTCCATGATTCTTTCTCAAATCTAAAAATTCAAA 26160 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 ||||| |||||||| || || ||||| || || | | ||| || ||| ||||| Sbjct 26159 AATATCGGCATGCCAAGGCTCCAAATAAATAGCAAAAGCTCCTTTTCTTTTTCCTCCTCC 26100 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 |||||| | |||||| ||||||| ||| | |||| | ||| || ||||| ||||| || Sbjct 26099 TTGATCCACATATCTTGCAGTATCATTAAATACTCGAAGCATAGGAACAATGCCATTAGA 26040 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484 | |||||||| || ||||||| | | || | ||||| | || || | || Sbjct 26039 AGTTCCATTGGTACCTCGAATATAAGATTTGGTTGCACGTATATCATGAACTGCCAATCC 25980 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544 |||||||| || ||||||| || | ||||| | ||| | ||||||||||||||||| Sbjct 25979 AATACCACCAGCACTTTTAGAAATAACTGCACATCTTTTTAAAGTATCATAAATTCCTTC 25920 Query 48545 TATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCC 48604 || || || ||||| ||||||| |||||| || | || || ||| || Sbjct 25919 AATGGAGTCTTCAGTCATAGTTAATAGGAAACAAGAGGATAACTGAGGTCTTGGAGTACC 25860 Query 48605 TGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGT 48664 | ||| ||||| || || || |||||| |||| |||| || | | | ||| || Sbjct 25859 CGCATTGAATAAAGTAGGTGAAGCATGAGTAAAGTATTTTCGAGACATATAATCATAAGT 25800 Query 48665 TTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAACATAT 48723 || | || | || | || | ||| || ||||| | || ||| | ||| ||||||| Sbjct 25799 CTCCAATACTGCTTCCAAGTCATCCTTG-TGAATACCAACAGCTACTCTCATCAACATAT 25741 Query 48724 ATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTT 48783 ||| |||| ||| | | |||| || | || | ||| || ||| || |||| Sbjct 25740 GTTGTGGTCGTTCTATCACTTTGCCATCCACACGTAATAAATAGGAACGTTCTAAAGTTT 25681 Query 48784 TAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 | || ||||| || | || |||||||| ||||| |||||| Sbjct 25680 TGAATCCAAAGTAATCATAAGAAAAGTCTCGATCATAAATAAT 25638 Score = 113 bits (124), Expect = 5e-20 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 || ||||||||||||||||| ||||| |||||| |||| |||| ||||||||| | Sbjct 27752 GTACGTAAATAATACATACCGGTCTTCAAACCTTTCTTCCAACCATGAAAATGCATAGAA 27693 Query 47073 GTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATA 47132 |||||||| | | | ||| || |||| | ||| | | ||| || ||||||||| Sbjct 27692 CTTAATTTACCAATATTCGGTGATGCTATATATACATTTAAACTTTGGCTTTGATCAATA 27633 Query 47133 AATGCACCTCTATCAGCTGCCATATCTAAAATAACC 47168 || |||||||| || |||||||||||| ||||||| Sbjct 27632 AAAGCACCTCTGTCCGCTGCCATATCT--AATAACC 27599 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 47906 TACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGT 47965 ||| |||| ||| | |||||||||| ||||||| ||| | ||||| |||| ||||| Sbjct 26611 TACTTCATCAGGACTCGTATATTGTACAATTTCAGTACACAAATTACTACATCGAATAGT 26552 Query 47966 ACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGT 48025 ||||| ||||| ||||| | | || || || |||||||||||| | || | Sbjct 26551 TCCCAAGTTTTGTTGATTGCTTTTCCTATTGCAATGATCTTTGTAAAGCATATATGGATT 26492 Query 48026 TCCAGTTTCTATCTGAGATTCAATGATAG 48054 |||||||||||| || | ||| | |||| Sbjct 26491 TCCAGTTTCTATTTGTGCTTCTAAAATAG 26463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105757586120