Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq62 242 4e-59 seq26 201 1e-46 >seq62 Length=89227 Score = 242 bits (268), Expect = 4e-59 Identities = 415/599 (69%), Gaps = 11/599 (2%) Strand=Plus/Plus Query 37165 TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAG 37224 || |||| | || ||||| |||||||| || |||||||||| |||||| ||||| | Sbjct 48121 TATACAAAAGGCAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGG 48180 Query 37225 AAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATC 37284 | || || | || ||||| || || | ||| || | ||||||||| | |||||| | Sbjct 48181 AGAAAGTAAGACCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAAC 48240 Query 37285 CAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAA--GTTGA 37342 |||||||||| || ||||| ||||||||||| || || | ||| | | ||| | || Sbjct 48241 CAGAAAAGAATATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAACTGCTGG 48300 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || | ||||||||| | |||||| || || ||| ||||| || | Sbjct 48301 AACATCGT-----ATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATT 48355 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 ||| || || | || | | |||||| | ||||| ||||||||||| || || Sbjct 48356 TTCGATGGCGTAGAACAAACGACGCTTTTCTGCCATATCTCGAATATAAGTATCGATAAG 48415 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 |||| |||||||| || || | |||||| ||||| |||||||||||||| ||||| | Sbjct 48416 TAAAGCGTACATTTCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACG 48475 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 ||||| | || |||||| || || ||| | || ||||||||||| || || || Sbjct 48476 CGCTTCGGGTACTTGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCATTCACGATGCC 48535 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT--CTTTCATCATTTGAT 37640 |||| ||||||||| || || | ||||| |||||| ||| || | || | | || Sbjct 48536 ATCAGAAGCTGCAAAAAATGCCAAAACATGGGATATAAAGTGTTGCTCTGATGAATGGAG 48595 Query 37641 AATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTT 37700 | |||||||| | ||||| |||| || ||||| ||||| ||||| ||||| Sbjct 48596 A--GAATTCCAATCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAACTA 48653 Query 37701 GCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 || ||||||||||| | ||| || | ||| | ||| ||||||| ||||| Sbjct 48654 GCTTCCGCACGTTTATATAATTCCCATATTTGCCTATATCTTATGGGAAATAAAACAAA 48712 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 36864 TTACTATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTC 36923 || ||| ||||||||| ||||||||||||| |||| |||||| |||||||| || Sbjct 47764 TTCCTAGCCATAACTCCTGCCATTTGATATTCTCCTACTCTTCTTTCAAAAAAATTGGTT 47823 Query 36924 TTTCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATTAGAT 36968 || |||| || ||||| ||||| ||||||||||||| ||| Sbjct 47824 TTGCCTTGTAACGATATCAACTCCATCCAATCAAATGGATTGGAT 47868 >seq26 Length=183063 Score = 201 bits (222), Expect = 1e-46 Identities = 364/528 (69%), Gaps = 7/528 (1%) Strand=Plus/Plus Query 37172 TAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGT 37231 |||||||||||| |||||||| ||||||||||| | || | |||||||| ||||| Sbjct 77093 TAAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGAGAAGGT 77152 Query 37232 TAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAA 37291 ||||||||||| | ||||| ||||| | ||||||||| | |||||| |||||||| Sbjct 77153 CAATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACCAGAAAA 77212 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATC 37351 || || || || || || |||||||| || | ||| | | |||| | | | || Sbjct 77213 AAATATTCCCTCTACAGCAGCAAATGCCACTAAACGCTCAGCAAAAGAGGCA-GAGGATT 77271 Query 37352 AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGC 37411 | |||||| || | ||| | |||||| | || ||| ||| ||| ||||| Sbjct 77272 GG--ATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTTCCATTGC 77329 Query 37412 TTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATA 37471 || || | | ||||||| | |||| ||||||||||| || || | | ||| Sbjct 77330 TTCAAATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAAGAGAATA 77389 Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531 |||| || ||||||||||| || ||||| ||||| ||||||||||| | ||||| | Sbjct 77390 AGTTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTGCTTCTGG 77449 Query 37532 TAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 | || ||||| | |||| || | || | ||| || ||| || || || || Sbjct 77450 AATCTGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGTCGGAAGA 77509 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGAT--AATTTTTTC 37649 |||||||||||| | || | || ||||| | ||||| | || ||||| ||| Sbjct 77510 TGCAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATC--TGCATTCAATTTCTTC 77567 Query 37650 CAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAA 37697 ||||| | | || | |||||||| | ||| ||| | ||||||||| Sbjct 77568 CAATCTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAA 77615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592313594085320