Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6 125 5e-24 seq9 116 3e-21 seq54 89.7 4e-13 >seq6 Length=291449 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| || ||| |||||||||| || |||||| || ||||| |||||||| Sbjct 274545 CCTCCTCTTAACCTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCAGAA 274486 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| |||| ||||||||||| |||||||| || |||| ||||||||| | ||| Sbjct 274485 AGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGAGGA 274426 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || || || |||||| ||| ||| | | | || || | || || Sbjct 274425 ATACCTTCTTTATCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCAACT 274366 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || |||||||| ||||| ||||| ||||| || ||||| Sbjct 274365 TCCAATGTTATGGTTTTTCCAGTCAACGTTTTCACAAATATTTGCAT 274319 >seq9 Length=249065 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | ||||||||||| || || || ||||||||||||||| || || || Sbjct 144634 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGAC 144575 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | ||| | || |||||||| ||||| ||||| |||| || ||||| || | |||| Sbjct 144574 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144515 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| || ||| | | || ||||| | || || Sbjct 144514 ATACCTTCCTTGTCTTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAACT 144455 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| || || || || | ||| || ||||| |||||||| Sbjct 144454 TCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATCTGCAT 144408 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | ||||||||||| || || || |||||||||||||||||| || || Sbjct 144179 GCCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGA 144120 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | | || | || |||||||| ||||| ||||| |||| || ||||| || | ||| Sbjct 144119 CAAAGTACGGCCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGG 144060 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||| |||||||| |||||| || || | | || ||||| | || || Sbjct 144059 AATGCCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAAC 144000 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| || || || || | ||| || ||||| || ||||| Sbjct 143999 TTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 143952 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | ||||||||||| || || || ||||||||||||||| || || || Sbjct 144407 GCCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGA 144348 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | | ||| | || |||||||| ||||| ||||| |||| || ||||| || | ||| Sbjct 144347 CAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGG 144288 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || || |||||||| |||||| || || | | || ||||| | || || Sbjct 144287 AATACCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAAC 144228 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| || || || || | ||| || ||||| || ||||| Sbjct 144227 TTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 144180 >seq54 Length=107229 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || ||||||||||| || || || |||||| |||||||| || || ||| Sbjct 11017 CCTCCTCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGAT 11076 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| |||| || | || ||||| ||||| || | || ||||| || | ||| Sbjct 11077 AGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGA 11136 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || || || |||||| || || | | || || || | || || Sbjct 11137 ATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACT 11196 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| || ||||| || | |||||| ||||| || ||||| Sbjct 11197 TCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935589720859