Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq36 529 2e-145 >seq36 Length=158315 Score = 529 bits (586), Expect = 2e-145 Identities = 737/1030 (72%), Gaps = 2/1030 (0%) Strand=Plus/Plus Query 164598 AGGGGGTGGTTCGACATCCTAGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGG 164657 || |||||||||||| | | ||||| ||||| ||||| ||||| ||||| ||| | || Sbjct 39768 AGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGGA 39827 Query 164658 TGGTCTGGATTACTACTTCTTCCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGC 164717 ||||| || || |||||| |||| | | ||||| || | || | ||| |||| || Sbjct 39828 TGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGGT 39887 Query 164718 ACAGCTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCT 164777 ||| ||||||| || |||||| || |||||| | |||||||| ||| | ||||| | Sbjct 39888 ACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATGT 39947 Query 164778 AACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTA 164837 || ||| | || || || || || | ||||| || |||||| || || || || | Sbjct 39948 AATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCA-TTATTATT 40006 Query 164838 CTT-TGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATG 164896 || ||||| || || |||| || |||| | ||||| ||| |||| || || || Sbjct 40007 TTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTTG 40066 Query 164897 GAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGA 164956 || ||| ||| | || ||||| || ||| | || ||||| | || || ||||| Sbjct 40067 GACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTTTGTTTGCGTCAATTTGA 40126 Query 164957 GCTGGCACGTCTCATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGC 165016 | || | | | || || | || |||||||| || || || || || || ||||| Sbjct 40127 AATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATTGC 40186 Query 165017 TGTTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCC 165076 |||||||| || || ||||| || ||||| || || | ||||||||||| ||||| Sbjct 40187 AGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCTCC 40246 Query 165077 GTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTG 165136 ||||| || ||||| |||||| |||| | || || | ||||| ||||| || || Sbjct 40247 TAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAATTG 40306 Query 165137 GACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATC 165196 ||| | || || || ||||||||||||||||| || || | ||||||||||| || | Sbjct 40307 GACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTTTG 40366 Query 165197 TGCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATAC 165256 |||||||||||||| || || || |||||||||| ||| ||||| || || ||||| Sbjct 40367 TGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTAATAC 40426 Query 165257 CTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCG 165316 || | ||| ||| | ||||| ||| || |||||||| ||||| || || || || Sbjct 40427 TTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTAATCG 40486 Query 165317 CTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCAT 165376 || ||||| || || || || |||| ||||||||||| | ||||| |||||||| || Sbjct 40487 TTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTTTTAT 40546 Query 165377 GTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCT 165436 | | |||||||| |||| || | |||||| ||||||||| || || || ||||| | Sbjct 40547 GCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTTGCATT 40606 Query 165437 CAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATT 165496 || | ||||| || ||||| || ||| || | | || ||||| || |||||||| Sbjct 40607 AAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCCAGAATT 40666 Query 165497 TGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACC 165556 |||||| || || || ||||| | || | |||||||| || | || ||| ||||| | Sbjct 40667 TGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATGGCAAC 40726 Query 165557 TGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGC 165616 |||||||| |||||||| ||| | |||||||| || || || || | || || || Sbjct 40727 ACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATGC 40786 Query 165617 CCTTTAATAA 165626 |||||||||| Sbjct 40787 CCTTTAATAA 40796 Score = 405 bits (448), Expect = 6e-108 Identities = 666/955 (70%), Gaps = 8/955 (1%) Strand=Plus/Minus Query 162919 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 162978 || || ||||| | |||||||| || ||| | ||||| || || | | |||| || Sbjct 27738 AATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACAGCTAC- 27680 Query 162979 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGA 163037 |||||| || || | | || | |||||||| || || || || ||||| || | || Sbjct 27679 ATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGA 27620 Query 163038 GCCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATC 163097 || || | || ||| | | ||||| || || || || ||||||| |||| || | Sbjct 27619 ACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGTACCTAC 27560 Query 163098 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 163157 || || ||||| || | || |||||||| || |||||||| ||||| | ||||| || Sbjct 27559 ATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATG 27500 Query 163158 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGC 163217 ||| ||||| || ||||||| || | |||| || |||||| |||| || || | ||| Sbjct 27499 GCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGC 27440 Query 163218 ATATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGT 163277 |||||||||||||||||||||| | ||||| | || ||||| || ||||| || Sbjct 27439 ATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGT 27380 Query 163278 AGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 163337 ||| | ||| || |||||||| ||||| | || || || | |||||||| | || || Sbjct 27379 AGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTATTGGACA 27320 Query 163338 AGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGT 163397 |||| ||| || || | |||||| | || || ||||| || || || | ||| | || Sbjct 27319 AGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGT 27260 Query 163398 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGT 163457 |||||||| || || || || | ||||| || || |||||| |||| || |||||||| Sbjct 27259 TTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGT 27200 Query 163458 CTTCGGTGGATCACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCG 163517 || || || ||| | || |||||||| ||| |||||| || || | | || Sbjct 27199 ATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACG 27140 Query 163518 TGAGACGACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 163577 ||| || || || | |||||| |||| ||||||| || ||||| |||||| | || || Sbjct 27139 TGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATATGAAAC 27080 Query 163578 ATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATT 163637 || ||||||||||| || ||||| || || || | || || |||||||||||| || Sbjct 27079 TTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTT 27020 Query 163638 CAACAA--CA-GCAGAAGTCTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTG 163694 || || || || | | || |||||| | || |||||| || || | || || Sbjct 27019 TAATAATTCACGCTCA---TTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTG 26963 Query 163695 GTTTACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 163754 | | || | | || | ||||| |||||||| ||| | || || || || || || || Sbjct 26962 GCTCACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAATCA 26903 Query 163755 GTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGC 163814 || | ||||| ||| || | || | || |||||||| || | | || || || Sbjct 26902 ATCTGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCGTGC 26843 Query 163815 TGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAT 163869 | | || || ||||| |||||||| ||||| ||||| ||||| || || ||| Sbjct 26842 AAATTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGAT 26788 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 164046 AGTGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATT 164105 ||||| || |||||||| || |||| ||||| |||||| |||| | ||| | | Sbjct 69663 AGTGTCCTGATGATCAATATATATTAGATGCAGCTGAAGAACAAGGATTAGATCTACCCT 69722 Query 164106 ACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTG 164165 | |||||| | || || || || || | |||||||||||| | || ||| || | Sbjct 69723 ATTCTTGTAGAGCAGGAGCATGTTCTACTTGTGCAGGTAAACTGTTAGAAGGACAAGTAG 69782 Query 164166 ATCAGAGTGATCAGTCATTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGT 164225 |||| |||||||||||| ||||| ||||||||| | ||||||||| || || || | Sbjct 69783 ATCAATCTGATCAGTCATTTCTAGATGATGATCAGGTAAAAGCAGGATTTGTCCTAACAT 69842 Query 164226 GTGTAGCATATCCAAC 164241 |||| |||||||| || Sbjct 69843 GTGTTGCATATCCTAC 69858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563206551628040