Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq36 511 5e-140 >seq36 Length=158315 Score = 511 bits (566), Expect = 5e-140 Identities = 740/1036 (71%), Gaps = 10/1036 (1%) Strand=Plus/Plus Query 9805 GAGGGAATGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGG 9864 ||||| ||||| ||| | ||||||| ||||| ||||| ||||| ||||| ||| | || Sbjct 39769 GAGGG--TGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGG 39826 Query 9865 TTGGTCTGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGG 9924 ||||| || | || |||||||| | | ||||| || | |||| |||| |||| || Sbjct 39827 ATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGG 39886 Query 9925 CACTACGTTTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGC 9984 || || ||||| || |||||| || || || | || | ||| | || || Sbjct 39887 TACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATG 39946 Query 9985 TAATTTCCTTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCT 10044 |||||| | || || || || |||| ||||| || |||||| || || || || | Sbjct 39947 TAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCA-TTATTAT 40005 Query 10045 ACTT-TGGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCT 10103 || ||||| || || |||| || ||||| | ||| || |||| || || | Sbjct 40006 TTTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTT 40065 Query 10104 GGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTG 10163 || ||||| || | || || || || || || || || ||| || || || |||| Sbjct 40066 GGACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTTTGTTTGCGTCAATTTG 40125 Query 10164 AGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTG 10223 | | || |||||| | ||||| | || |||||||| || || ||||| || || |||| Sbjct 40126 AAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATTG 40185 Query 10224 CTGTTTTTGT--CAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGC 10281 | |||||||| |||| ||| || || |||||||| || || |||||||||| ||||| Sbjct 40186 CAGTTTTTGTTTCAGTATTT--CTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGC 40243 Query 10282 GCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAA 10341 || ||||| || || || || || || || || || | || | || || || ||||| Sbjct 40244 TCCTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAA 40303 Query 10342 TTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCT 10401 |||||| | ||||| || ||||||||||| |||||||| ||||| ||||| || | || Sbjct 40304 TTGGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACT 40363 Query 10402 ATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAA 10461 | || || || |||| |||||||| || ||| | | ||||||||||| || || Sbjct 40364 TTGTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTAA 40423 Query 10462 CACTTTCAAAGCTTTTGATAGC-ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTA 10520 ||||||| |||||| | | | || ||| ||| || || ||||| |||||||| |||| Sbjct 40424 TACTTTCAGGGCTTTT-ACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTA 40482 Query 10521 ACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCT 10580 | ||||| ||||| || || ||||| |||| ||| || ||| | ||||| ||||| | Sbjct 40483 ATCGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTT 40542 Query 10581 TTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTG 10640 ||||||| ||||| || |||| || | ||||| |||||||| ||||| || |||| Sbjct 40543 TTATGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTTG 40602 Query 10641 CTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTG 10700 | | ||| | ||||| || |||||||| |||||||| | | || |||| || || | Sbjct 40603 CATTAAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCCAG 40662 Query 10701 AATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGG 10760 |||||||||| || ||||| || ||| | ||||| || |||||| | | |||||||||| Sbjct 40663 AATTTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATGG 40722 Query 10761 CACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTA 10820 || || || |||||||| |||| ||||| |||||||| || ||| | || | || | Sbjct 40723 CAACACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAA 40782 Query 10821 ATGCACTGTGATATTC 10836 |||| || | ||| || Sbjct 40783 ATGCCCTTTAATAATC 40798 Score = 448 bits (496), Expect = 5e-121 Identities = 691/986 (70%), Gaps = 0/986 (0%) Strand=Plus/Minus Query 8239 TGGGAAAATTTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTT 8298 |||||| |||||| ||| | ||| || | ||||| | || | || |||||| Sbjct 27774 TGGGAACGTTTTTGTTCTTGGATTACTAGCACAGAAAATCGTCTCTACATAGGTTGGTTT 27715 Query 8299 GGCGTTCTCATGATCCCAACCCTTCTTGCCGCTACAATTTGCTTCATTACCGCATTCGTT 8358 || || | |||||||| || | || | |||||| | || || | | ||| | Sbjct 27714 GGAGTATTAATGATCCCTACATTACTAACAGCTACATCTGTATTTATAATTGGATTTATA 27655 Query 8359 GCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTAC 8418 |||||||| || || || || ||||| || | ||||||||| | ||||| | | || Sbjct 27654 GCTGCTCCACCAGTTGATATAGACGGTATTAGAGAACCAGTTTCAGGATCATTGTTATAT 27595 Query 8419 GGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTC 8478 || || || || || ||||||| |||| || | ||||| ||||| || | || ||| Sbjct 27594 GGAAATAATATTATAACTGGTGCTATTGTACCTACATCTAATGCAATAGGAATACATTTC 27535 Query 8479 TACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAG 8538 || || || |||||||| || ||| | ||||| ||||| || || || |||||||| | Sbjct 27534 TATCCTATTTGGGAAGCAGCATCTTTAGATGAATGGCTATATAATGGCGGTCCTTATGAA 27475 Query 8539 CTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAACTT 8598 | ||||||| |||||| | |||| | | ||| |||||||| |||||||||||| | Sbjct 27474 TTAATAGTTTTGCACTTCTTTATTGGAATTTGTGCATATATGGGACGTGAATGGGAATTA 27415 Query 8599 TCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCCGCT 8658 || || ||||| |||||||||||||| || || | ||| ||||||||||| || Sbjct 27414 AGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGTAGCTTTCTCAGCTCCTGTTGCTGCA 27355 Query 8659 GCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGATGGTATGCCT 8718 || | |||||||| || |||||||| |||| |||||| || || ||||||||||| Sbjct 27354 GCCACAGCTGTATTTATTATCTATCCTATTGGACAAGGTAGTTTTTCAGATGGTATGCCA 27295 Query 8719 CTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTG 8778 | ||||| || ||||| || || | |||| | || ||||| ||||| || || || | Sbjct 27294 TTAGGTATTTCTGGTACTTTTAATTTTATGTTAGTTTTCCAAGCTGAACATAATATTTTA 27235 Query 8779 ATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCA 8838 ||||| || || || ||| | |||||||||||||| || || || || | ||| ||| Sbjct 27234 ATGCATCCGTTTCATATGATGGGTGTTGCTGGTGTATTTGGAGGTTCATTATTTAGTGCA 27175 Query 8839 ATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAACCGAGTCTCAA 8898 ||||| || || || || ||||| || | ||||| || || || | |||||| | Sbjct 27174 ATGCACGGCTCTCTTGTAACTTCAAGTTTGATACGTGAAACAACAGAGAATGAGTCTGCA 27115 Query 8899 AACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGC 8958 ||| |||| || || || || |||||| | |||||||| ||||| ||||| |||||||| Sbjct 27114 AACAATGGTTATAAATTTGGCCAAGAATATGAAACTTATAACATCGTTGCTGCTCATGGT 27055 Query 8959 TACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTC 9018 || ||||| | || || |||||||||||| ||||| ||||| | || |||||| Sbjct 27054 TATTTTGGAAGATTAATTTTCCAATATGCAAGCTTTAATAATTCACGCTCATTACATTTC 26995 Query 9019 TTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATG 9078 ||| | ||| ||||| || || | || ||| | || | | || || || ||| Sbjct 26994 TTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCTCACATCTTTAGGTATCAGCACAATG 26935 Query 9079 GCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTG 9138 || || ||| | ||||| || || || || || || || | || |||||| |||| Sbjct 26934 GCATTTAACTTAAATGGATTTAATTTTAATCAATCTGTTGTTGATTCTCAAGGAAGAGTA 26875 Query 9139 CTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAA 9198 | || || ||||| || | | || || ||| | || || ||||| ||||| ||| Sbjct 26874 ATTAATACTTGGGCTGATATTTTAAATCGTGCAAATTTAGGAATAGAAGTAATGCATGAA 26815 Query 9199 AGAAACGCACACAACTTCCCGCTTGA 9224 | || ||||| ||||| || || || Sbjct 26814 CGTAATGCACATAACTTTCCTCTAGA 26789 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 15398 ATATCGGGAATTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGCCACAGGTT 15457 || |||||| ||||| || ||||||||||| ||||||||||||||| ||| | |||||| Sbjct 145220 ATCTCGGGATGTAGCGTAGCTTGGTAGCGCGTCTGCTTTGGGAGCAGAATGTCGCAGGTT 145161 Query 15458 CAAATCCTGTATTCCCGA 15475 ||||||||| |||||| Sbjct 145160 CAAATCCTGCCATCCCGA 145143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516477204552000