Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq6 111 1e-19 seq9 86.0 5e-12 >seq6 Length=291449 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| ||||| || || || |||||||| || ||| |||||||| Sbjct 274319 ATGCAAATATTTGTGAAAACGTTGACTGGAAAAACCATAACATTGGAAGTTGAACCTTCT 274378 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || || || || ||||| || | || ||||||| Sbjct 274379 GATACAATCGAAAATGTGAAATCCAAGATTCAAGATAAAGAAGGTATTCCTCCAGATCAA 274438 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||| ||||| || || || |||||||| | ||| | | |||||||| Sbjct 274439 CAGAGACTTATTTTTGCCGGAAAGCAGTTGGAAGACGGAAGAACGCTTTCTGATTATAAT 274498 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAATA 28787 || || ||||| |||||| | || |||| || || ||| ||||||| || ||| Sbjct 274499 ATCCAGAAAGAGTCTACTTTACATTTGGTTTTGAGGTTAAGAGGAGGTATTATA 274552 >seq9 Length=249065 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || || | || || || || ||||| ||| ||||| ||| Sbjct 144180 ATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144239 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| || || ||||| || || | ||| ||| ||| Sbjct 144240 GATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 144299 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || ||||| || ||||| ||||||||| | ||| || | || ||||| Sbjct 144300 CAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAAT 144359 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||| ||||| || ||| |||| || | || | ||||| || Sbjct 144360 ATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGGCAT 144409 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || || | || || || || ||||| ||| ||||| ||| Sbjct 144408 ATGCAGATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144467 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || || ||||| || || | ||| ||| ||| Sbjct 144468 GATACTATTGAAAATGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 144527 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || ||||| || ||||| ||||||||| | ||| || | || ||||| Sbjct 144528 CAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAAT 144587 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||||||||||| ||||| || ||| |||| || Sbjct 144588 ATTCAAAAAGAGTCTACCCTTCACTTGGTGTT 144619 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 |||||||||||||||||| || || | || || || || ||||| ||| ||||| Sbjct 143948 AAAAATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACC 144007 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||||| || | | | ||||| || || ||||| || || | ||| ||| Sbjct 144008 CTCAGATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGA 144067 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||||| | | || ||||| || ||||| ||||||||| ||| || | || || Sbjct 144068 CCAACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGTACTTTGTCAGACTA 144127 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||||||| ||||| || ||| |||| || | || | ||||| || Sbjct 144128 CAATATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGGCAT 144181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425402555059107