Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq36 542 3e-149 >seq36 Length=158315 Score = 542 bits (600), Expect = 3e-149 Identities = 742/1031 (72%), Gaps = 4/1031 (0%) Strand=Plus/Plus Query 162107 AAGGGGGTGGTTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGG 162166 ||| |||||||| || | |||| || ||||| ||| | || || || || ||| |||| Sbjct 39767 AAGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGG 39826 Query 162167 CTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGG 162226 ||||| || | || |||||||| | | ||||| ||||| || | ||| |||| || Sbjct 39827 ATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGG 39886 Query 162227 GACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGC 162286 || ||||| || || ||||||||| || || | || ||| ||| | || || Sbjct 39887 TACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATG 39946 Query 162287 AAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCT 162346 || ||| | || || ||||| || | ||| ||| | |||||| || || | | | Sbjct 39947 TAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCATTATTATT 40006 Query 162347 TCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTG 162406 | ||||||| || || ||||||| || || | | ||||| ||| |||| || || || Sbjct 40007 TTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTTG 40066 Query 162407 GACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTT-CGCCAGTTTG 162465 ||||||| || | || || || ||||| | |||||||| || || || || |||| Sbjct 40067 GACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTT-TGTTTGCGTCAATTTG 40125 Query 162466 AACTGGCACGACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTG 162525 || | || || | |||| ||| | || |||||||| || ||||| ||||| || |||| Sbjct 40126 AAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATTG 40185 Query 162526 CTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCAC 162585 | || || ||| || |||||||| ||||| | || ||| | ||||| || || | Sbjct 40186 CAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCTC 40245 Query 162586 CGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACT 162645 | || || || ||||| ||||| ||||| | | || | ||||| |||||||| | Sbjct 40246 CTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAATT 40305 Query 162646 GGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCT 162705 |||| ||||||| ||||| |||||||| || || || || || || || ||||| || | Sbjct 40306 GGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTTT 40365 Query 162706 CTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACA 162765 |||||||||||||| ||| || || |||||| | | ||||||||||||| || || | Sbjct 40366 GTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTAATA 40425 Query 162766 CTTTTAAAGCATTTGACTCC-ACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAAC 162824 |||| | || ||| || || ||||| || ||||| ||||| |||||||| || || Sbjct 40426 CTTTCAGGGC-TTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTAAT 40484 Query 162825 CGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTT 162884 || || |||||||| ||||| ||| |||| ||| |||||| | ||| | ||||| ||| Sbjct 40485 CGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTTTT 40544 Query 162885 ATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCT 162944 ||||| ||||| || || | || | |||||||| ||||| ||||| || ||||| || Sbjct 40545 ATGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTTGCA 40604 Query 162945 CTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAG 163004 | ||| | ||||| || || ||||| ||||||||| | ||||| ||||| ||||| || Sbjct 40605 TTAAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCCAGAA 40664 Query 163005 TTTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCA 163064 |||||||| || ||||| || || | ||||| |||||||| | |||||||| | ||| Sbjct 40665 TTTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATGGCA 40724 Query 163065 CCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAAC 163124 || || ||||| ||||| || ||||| ||||| || ||||| || ||| | || || Sbjct 40725 ACACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAAT 40784 Query 163125 GCTCTATGATA 163135 || || | ||| Sbjct 40785 GCCCTTTAATA 40795 Score = 491 bits (544), Expect = 5e-134 Identities = 705/988 (71%), Gaps = 4/988 (0%) Strand=Plus/Minus Query 160867 TGGGAACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTC 160926 ||||||| |||||| ||| | || ||||| || || || || || | |||||||| Sbjct 27774 TGGGAACGTTTTTGTTCTTGGATTACTAGCACAGAAAATCGTCTCTACATAGGTTGGTTT 27715 Query 160927 GGCGTCCTGATGATTCCCTGC-TTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCG 160984 || || | ||||| |||| | || || | ||||| || ||| || || |||| || Sbjct 27714 GGAGTATTAATGAT-CCCTACATTACTAACAGCTAC-ATCTGTATTTATAATTGGATTTA 27657 Query 160985 TTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGT 161044 | | |||||| || || || || ||||| ||| | ||||| || | || || | | | Sbjct 27656 TAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGAACCAGTTTCAGGATCATTGTTAT 27597 Query 161045 ATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACT 161104 ||||||| || || || |||||||| || | ||| | ||||| || || || | || | Sbjct 27596 ATGGAAATAATATTATAACTGGTGCTATTGTACCTACATCTAATGCAATAGGAATACATT 27537 Query 161105 TCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCC 161164 |||| || || |||||||||||| | | || |||||||| || || || ||||||| Sbjct 27536 TCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATGGCTATATAATGGCGGTCCTTATG 27477 Query 161165 AACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAAC 161224 || | | || || |||||| | ||||| || | ||| || ||||| ||||| |||||| Sbjct 27476 AATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGCATATATGGGACGTGAATGGGAAT 27417 Query 161225 TTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTG 161284 | || ||||| ||||||||||||||||| |||||| | ||| |||||||| |||| Sbjct 27416 TAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGTAGCTTTCTCAGCTCCTGTTGCTG 27357 Query 161285 CAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGC 161344 |||| | || || || | |||||||| | || |||||| ||| || |||| |||| Sbjct 27356 CAGCCACAGCTGTATTTATTATCTATCCTATTGGACAAGGTAGTTTTTCAGATGGTATGC 27297 Query 161345 CTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTC 161404 | | || || |||||||| || || | ||| | || |||||||| || || || ||| Sbjct 27296 CATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGTTTTCCAAGCTGAACATAATATTT 27237 Query 161405 TCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTG 161464 | ||||| || || |||||| | || || || ||||| ||||| ||||| | || |||| Sbjct 27236 TAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGTATTTGGAGGTTCATTATTTAGTG 27177 Query 161465 CAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCC 161524 |||||||||| || || || || || || | |||||||| || || || ||||| Sbjct 27176 CAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACGTGAAACAACAGAGAATGAGTCTG 27117 Query 161525 AGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACG 161584 ||| ||||||| || || || |||||| | || || || |||||||||||||| || | Sbjct 27116 CAAACAATGGTTATAAATTTGGCCAAGAATATGAAACTTATAACATCGTTGCTGCTCATG 27057 Query 161585 GGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACT 161644 | || || || | | ||||||||||| || ||| || || || ||||| | || | Sbjct 27056 GTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTTTAATAATTCACGCTCATTACATT 26997 Query 161645 TCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCA 161704 ||||| | ||| ||||| || || | || ||| |||| | | || | ||||| | Sbjct 26996 TCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCTCACATCTTTAGGTATCAGCACAA 26937 Query 161705 TGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAG 161764 ||||||| ||| | ||||| || || || || || ||| | |||||| ||| || | || Sbjct 26936 TGGCATTTAACTTAAATGGATTTAATTTTAATCAATCTGTTGTTGATTCTCAAGGAAGAG 26877 Query 161765 TTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACG 161824 | || || || ||||| || || | || ||||| | | || || ||||| ||||| | Sbjct 26876 TAATTAATACTTGGGCTGATATTTTAAATCGTGCAAATTTAGGAATAGAAGTAATGCATG 26817 Query 161825 AGCGCAATGCTCACAACTTCCCTCTTGA 161852 | || ||||| || ||||| ||||| || Sbjct 26816 AACGTAATGCACATAACTTTCCTCTAGA 26789 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 |||| ||||||| |||||||||||||| ||||||||||||| | ||||||||||| || Sbjct 145216 CGGGATGTAGCGTAGCTTGGTAGCGCGTCTGCTTTGGGAGCAGAATGTCGCAGGTTCAAA 145157 Query 157750 TCCTGTCACCCCGA 157763 ||||| || ||||| Sbjct 145156 TCCTGCCATCCCGA 145143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547744235318280