Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq36 551 7e-152 >seq36 Length=158315 Score = 551 bits (610), Expect = 7e-152 Identities = 747/1035 (72%), Gaps = 6/1035 (1%) Strand=Plus/Minus Query 101704 TATCACAGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGT 101763 ||| | || || || || | ||| || ||||| || || |||||||| |||||||| ||| Sbjct 40795 TATTAAAGGGCATTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGGT 40736 Query 101764 TGATCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAG 101823 ||||| || ||||| |||||| | || ||||||||| | || | || || || || Sbjct 40735 TGATCTTGTGTTGCCATCCATGCTCTTATACCTTCATTTAGAAGTAAATTTTTAGTATAA 40676 Query 101824 AACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 101883 || ||||| || ||||| || ||||| || | | ||||| || ||||| ||||| ||| Sbjct 40675 AAAGTCTCAAATTCTGGGTCCTCTGCGGCACGTAATTCTTGAGAGACAAAATCATATGCA 40616 Query 101884 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGA 101943 || | || | ||||| || || ||||| || || |||||||| | || |||| || Sbjct 40615 CGTAAATTTAATGCAAGTCCTATGATACCAATAGAGCTTGTCCATAATCCTGTAACTGGC 40556 Query 101944 ACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGA 102003 ||||| |||||||| ||||| | ||| || || ||| |||||||| |||||| ||||| Sbjct 40555 ACAAATAGCATAAAAAAATGTAGCCATCTTTTGTTAGAAAATGCAACACCAAAAATTTGT 40496 Query 102004 GACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAAT 102063 ||||| ||||| || || ||||||||||||||||| || || |||||| | || Sbjct 40495 GACCAAAAACGATTAGCCGTAACCATTGAATAAGTTTCCTCTGATTGTGTTGGTGTAAAA 40436 Query 102064 GCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCG 102123 || ||||||| || || || |||||||| | | || ||||| ||||| | || Sbjct 40435 GCCCTGAAAGTATTAGCAGCTTCGCCATCTTCGAATAATGTATTCTCTACAGTCGCTCCA 40376 Query 102124 TGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGG 102183 || || || | || | ||||||||| || || || ||||||||||||||||| ||||| Sbjct 40375 TGAATAGCACAAAGTAATGCTCCTCCGAGTATTCCAGCAACACCCATCATATGAAATGGA 40316 Query 102184 TTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACA 102243 || | ||||| |||||||| || |||| || | | |||| ||| || |||||||| Sbjct 40315 TTTAAAGTCCAATTATGGAAACCTTGTAAAAATAAAATAAATCGAAAGATAGCTGCAACT 40256 Query 102244 CCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTG 102303 ||||| || ||||| |||||||| | || || || ||||| || ||||| || Sbjct 40255 CCAAAACTAGGAGCAAAAAACCAACTAGCTTGCCCAAGTGGATAAATAAGAAATACTGAA 40196 Query 102304 ACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAAC 102363 |||||||| || || || || || || || || |||||||| || | |||||| | ||| Sbjct 40195 ACAAAAACTGCAATTGGTCCTGAAAAAGCTATTGCATTGTATGGCCTAATTCCGACTAAT 40136 Query 102364 CTAGCCAACTCGAATTGACG-AAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGC 102422 || || | || |||||||| || || ||||| || | |||||| ||||| || | ||| Sbjct 40135 CTGGCTATTTCAAATTGACGCAAACAA-AAACCTATCAAGGCAAAAGCACCATGTAAAGC 40077 Query 102423 CACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGG 102482 ||||| ||| || || |||| ||| ||| || ||||| ||||||||||| || Sbjct 40076 AGTAAAAGTCCAAAGACCTCCAATTTGACACCATCTAGTAAAATCACCTTGAGCTTCTGG 40017 Query 102483 ACCCCA-AAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTG 102541 ||||| || | || || || || |||||| | ||||| |||| || ||||| | Sbjct 40016 TCCCCATAAAAATAATAA-TGAGTGTCCCATACTATTTGCAGGACTTGATACTGCAGCGG 39958 Query 102542 TAAGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAG 102601 | | |||||| ||||| | ||| ||| || | || || |||||||| |||||| Sbjct 39957 TTAAAAAATTACATCCTTCTAAATAAGAAGAAGCTAAACCATGCGTATACCAAGAAGTAA 39898 Query 102602 CAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTA 102661 |||| || || || |||| |||| | || | || ||||| | | |||||||| || | Sbjct 39897 CAAAAGTTGTACCTGTAAACCAGGCACCTAGAGCTAGATATGAACATGGAAAAAGTAGCA 39838 Query 102662 GTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAA 102721 || ||||| || | ||||||||| ||||| ||||| | ||| ||||| | | ||| | Sbjct 39837 AACCTGACCATCCAATAAAGACAAATCGATCACGTTTTAGCCAATCATCAACTAAGTCGA 39778 Query 102722 ACCAGTCCCTCCTTG 102736 |||| ||||| ||| Sbjct 39777 ACCA--CCCTCTTTG 39765 Score = 434 bits (480), Expect = 1e-116 Identities = 666/957 (70%), Gaps = 2/957 (0%) Strand=Plus/Plus Query 103181 TCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGACCAGCGCGG 103240 || || || ||||| || || ||||| || ||||| ||||| || || | | || || Sbjct 26789 TCTAGAGGAAAGTTATGTGCATTACGTTCATGCATTACTTCTATTCCTAAATTTGCACGA 26848 Query 103241 TTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGACTGGTTG 103300 || | || || ||||| || || | || | || ||| ||||| | || || || Sbjct 26849 TTTAAAATATCAGCCCAAGTATTAATTACTCTTCCTTGAGAATCAACAACAGATTGATTA 26908 Query 103301 AAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGAACCAGATA 103360 || || ||||| || | ||| || ||||| ||||| | ||| | | |||| ||| ||| Sbjct 26909 AAATTAAATCCATTTAAGTTAAATGCCATTGTGCTGATACCTAAAGATGTGAGCCAAATA 26968 Query 103361 CCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGAATGATGCG 103420 | |||||||| | || || || || ||| Sbjct 26969 CATACTACTGGCCATAAAGCTAAGAAGAAATGTAATGAGCGTGAATTATTAAAGCTTGCA 27028 Query 103421 TATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCTTCC 103480 |||||||| || || | || || ||||||||||| || |||||||| || || || | Sbjct 27029 TATTGGAAAATTAATCTTCCAAAATAACCATGAGCAGCAACGATGTTATAAGTTTCATAT 27088 Query 103481 TCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCACGAACCAGC 103540 ||||| || || || ||||||| |||| ||| ||| | || || || ||||| | || Sbjct 27089 TCTTGGCCAAATTTATAACCATTGTTTGCAGACTCATTCTCTGTTGTTTCACGTATCAAA 27148 Query 103541 GAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAAGACTCCAGCA 103600 || || ||||| || |||||||| ||||| || | |||||| || || || |||||| Sbjct 27149 CTTGAAGTTACAAGAGAGCCGTGCATTGCACTAAATAATGAACCTCCAAATACACCAGCA 27208 Query 103601 ACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCAGCATG 103660 || |||| ||| || || || ||||| | ||| |||||||| |||||||| || | ||| Sbjct 27209 ACACCCATCATATGAAACGGATGCATTAAAATATTATGTTCAGCTTGGAAAACTAACATA 27268 Query 103661 TAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGACCAAAG 103720 | || || || || |||||||| || |||||| |||| || || |||||| |||| Sbjct 27269 AAATTAAAAGTACCAGAAATACCTAATGGCATACCATCTGAAAAACTACCTTGTCCAATA 27328 Query 103721 GGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACACAGATC 103780 || |||| | ||||| || | || || ||||||||||| ||| | || || ||| Sbjct 27329 GGATAGATAATAAATACAGCTGTGGCTGCAGCAACAGGAGCTGAGAAAGCTACGGCTATC 27388 Query 103781 CAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATATGCATAGATG 103840 || || ||||| || ||||| ||| |||||||| |||||||||||||||||| | || Sbjct 27389 CAAGGACGCATTCCAAGACGATAGCTTAATTCCCATTCACGTCCCATATATGCACAAATT 27448 Query 103841 CCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAGCCACTCATCA 103900 ||||| | |||||| || |||| | || ||||||| || ||||| ||||| ||||| Sbjct 27449 CCAATAAAGAAGTGCAAAACTATTAATTCATAAGGACCGCCATTATATAGCCATTCATCT 27508 Query 103901 AGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGAGGAGGGAACA 103960 | |||||||||||||||||| |||||||| || | || ||||| || || | || ||| Sbjct 27509 AAAGATGCTGCTTCCCAAATAGGATAGAAATGTATTCCTATTGCATTAGATGTAGGTACA 27568 Query 103961 ACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCACGAATG 104020 | ||||||| || || || || || || | | ||| || | || ||||| | ||| Sbjct 27569 ATAGCACCAGTTATAATATTATTTCCATATAACAATGATCCTGAAACTGGTTCTCTAATA 27628 Query 104021 CCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGATGGTTGCCGC 104079 ||||| ||||| || || || || |||| || ||| || || ||||| || || | Sbjct 27629 CCGTCTATATCAACTGGTGGAGCAGCTATAAATCCAATTATAAATACAGAT-GTAGCTGT 27687 Query 104080 CAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTTTGT 104136 | | || |||||||| | || || |||||||| | |||||||| || | ||| Sbjct 27688 TAGTAATGTAGGGATCATTAATACTCCAAACCAACCTATGTAGAGACGATTTTCTGT 27744 Score = 127 bits (140), Expect = 3e-24 Identities = 171/237 (72%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 102775 TTAGTAGAGTGATTCTTCTTGTTCTGTCAGGACTACCACATCCGAAGTTGGGTATGCCAC 102834 ||| || | |||||||||||| | || | | | ||| |||| || ||||| || Sbjct 69904 TTAATATAATGATTCTTCTTGATGAGTTAAAATTGTTGCATTACAAGTAGGATATGCAAC 69845 Query 102835 GCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGATTGATCTTCTTG 102894 || || || ||||| ||||||| || ||||| ||||| ||||| || ||||| ||| Sbjct 69844 ACATGTTAGGACAAATCCTGCTTTTACCTGATCATCATCTAGAAATGACTGATCAGATTG 69785 Query 102895 ATCTACAGTACCCGATTCAATC---TTACCAGCACAAGTAGAACACGCACCAGCACGACA 102951 |||||| || ||| | | ||||| |||||||||||||| || || || | ||| Sbjct 69784 ATCTACTTGTCC---TTCTAACAGTTTACCTGCACAAGTAGAACATGCTCCTGCTCTACA 69728 Query 102952 GGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTGATCATC 103008 ||||| || ||||| | ||| ||| ||||| || |||| |||||||||||||| Sbjct 69727 AGAATAGGGTAGATCTAATCCTTGTTCTTCAGCTGCATCTAATATATATTGATCATC 69671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633510171107640