Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq36 430 4e-116 >seq36 Length=158315 Score = 430 bits (476), Expect = 4e-116 Identities = 687/986 (70%), Gaps = 0/986 (0%) Strand=Plus/Plus Query 21477 TCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGG 21536 || || || ||||| ||||| || || |||||||| || || | || | || ||||| Sbjct 26789 TCTAGAGGAAAGTTATGTGCATTACGTTCATGCATTACTTCTATTCCTAAATTTGCACGA 26848 Query 21537 TTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTA 21596 || | ||| |||||||| || || || || ||| | || | | | | |||||| ||| Sbjct 26849 TTTAAAATATCAGCCCAAGTATTAATTACTCTTCCTTGAGAATCAACAACAGATTGATTA 26908 Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATA 21656 || || || ||||| ||||| || ||||| || | || | | | | ||||||| Sbjct 26909 AAATTAAATCCATTTAAGTTAAATGCCATTGTGCTGATACCTAAAGATGTGAGCCAAATA 26968 Query 21657 CCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCA 21716 | ||| || ||||| ||| | |||||||| | || |||||||||||||| ||| Sbjct 26969 CATACTACTGGCCATAAAGCTAAGAAGAAATGTAATGAGCGTGAATTATTAAAGCTTGCA 27028 Query 21717 TATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCC 21776 |||||||| || | | |||||||| || ||||||||||| || || ||||| || | Sbjct 27029 TATTGGAAAATTAATCTTCCAAAATAACCATGAGCAGCAACGATGTTATAAGTTTCATAT 27088 Query 21777 TCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGT 21836 ||||| ||||| || ||||||| ||| || | | || || || ||||| || | Sbjct 27089 TCTTGGCCAAATTTATAACCATTGTTTGCAGACTCATTCTCTGTTGTTTCACGTATCAAA 27148 Query 21837 GACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCC 21896 || || || || |||||||| ||| || || || |||||||| || || Sbjct 27149 CTTGAAGTTACAAGAGAGCCGTGCATTGCACTAAATAATGAACCTCCAAATACACCAGCA 27208 Query 21897 ACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATG 21956 ||||||| ||| ||||| |||||||| | |||||| || ||||| ||||| || | ||| Sbjct 27209 ACACCCATCATATGAAACGGATGCATTAAAATATTATGTTCAGCTTGGAAAACTAACATA 27268 Query 21957 TAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAAC 22016 | || || || || || || || || |||||| |||| |||||| || ||||||| Sbjct 27269 AAATTAAAAGTACCAGAAATACCTAATGGCATACCATCTGAAAAACTACCTTGTCCAATA 27328 Query 22017 GGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATC 22076 ||||| | || || ||||| || || || || |||||||| ||| | || || ||| Sbjct 27329 GGATAGATAATAAATACAGCTGTGGCTGCAGCAACAGGAGCTGAGAAAGCTACGGCTATC 27388 Query 22077 CAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACG 22136 || || | ||| || || |||||||| | |||||| || |||||||| || ||| | | Sbjct 27389 CAAGGACGCATTCCAAGACGATAGCTTAATTCCCATTCACGTCCCATATATGCACAAATT 27448 Query 22137 CCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCA 22196 ||||| | |||||| || || | | || | |||||||| || || ||||||||||| Sbjct 27449 CCAATAAAGAAGTGCAAAACTATTAATTCATAAGGACCGCCATTATATAGCCATTCATCT 27508 Query 22197 AGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACG 22256 | | || ||||||||||| || ||||| |||| ||| || |||||| | || || Sbjct 27509 AAAGATGCTGCTTCCCAAATAGGATAGAAATGTATTCCTATTGCATTAGATGTAGGTACA 27568 Query 22257 ACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGATT 22316 | || || | ||| || || || ||||| |||| || || | || ||||||| || Sbjct 27569 ATAGCACCAGTTATAATATTATTTCCATATAACAATGATCCTGAAACTGGTTCTCTAATA 27628 Query 22317 CCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGGCA 22376 || || || ||||| ||||| || | | ||| | || ||||| || |||||| | Sbjct 27629 CCGTCTATATCAACTGGTGGAGCAGCTATAAATCCAATTATAAATACAGATGTAGCTGTT 27688 Query 22377 AGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGTAGAG 22436 || | || ||||| | ||||| ||||| |||| || ||||| || | || Sbjct 27689 AGTAATGTAGGGATCATTAATACTCCAAACCAACCTATGTAGAGACGATTTTCTGTGCTA 27748 Query 22437 GTGACCCAGGAACAAAACTGCTCCCA 22462 || | ||| |||||||| | ||||| Sbjct 27749 GTAATCCAAGAACAAAAACGTTCCCA 27774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146207248216740