Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq19 271 4e-68 >seq19 Length=190679 Score = 271 bits (300), Expect = 4e-68 Identities = 450/642 (70%), Gaps = 11/642 (2%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||| ||||| |||||| ||| | ||| | || ||| | | |||||||||||| || Sbjct 26297 ATTGGGACAAAATAAACTCCATTTCTCATCCTTTTCTACTCTTTTCATAAATAAATCGGG 26238 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 || ||| | ||||||| ||||||| |||| ||||||| ||||| ||||||||| | Sbjct 26237 AACCCATAAACCATAAAACAAATCTCGTGCTCGATTTTCTTCCTTTCCATGATTCTTTCT 26178 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | |||||| || ||||||||||| | ||||| || || ||||| ||||||||| || Sbjct 26177 CAAATCTAAAAATTCAAAAATATCGGCATGCCAAGGCTCCAAATAAATAGCAAAAGCTCC 26118 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 ||||||||||||||| |||||||| || ||||||||||| ||||| || ||| | ||| Sbjct 26117 TTTTCTTTTTCCTCCTCCTTGATCCACATATCTTGCAGTATCATTAAATACTCGAAGCAT 26058 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 ||||| | ||| | ||| ||| || || | |||| | ||| || | | || Sbjct 26057 AGGAACAATGCCATTAGAAGTTCCATTGGTACCTCGAATATAAGATTTGGTTGCACGTAT 25998 Query 26188 ATCGTGAGCATG--AATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA--ATCTG 26243 ||| ||| | || ||| || || |||||||| | ||| |||||| ||||||| | | Sbjct 25997 ATCATGAAC-TGCCAAT-CCAATACCACCAGCACTTTTAGAAATAACTGCACATCTTTTT 25940 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAG 26303 ||| ||||| ||||||||| ||| || | |||| ||||| |||||||| | Sbjct 25939 AAA--GTATCATAAATTCCTTCAATGGAGTCTTCAGTCATAGTTAATAGGAAACAAGAGG 25882 Query 26304 ATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATC 26363 |||| || | | || || | ||| ||||| || |||| |||||||||| | ||| Sbjct 25881 ATAACTGAGGTCTTGGAGTACCCGCATTGAATAAAGTAGGTGAAGCATGAGTAAAGTATT 25822 Query 26364 CTTCACTCAAAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTAATTACTAACTTCAA 26423 | | || | |||||| || | ||| | || | | | || || ||| Sbjct 25821 TTCGAGACATATAATCATAAGTCTCCAATACTGCTTCCAAGTCATCCTTGTGAATACCAA 25762 Query 26424 TAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCATCTCTAA 26483 |||| ||| | | |||||| ||| |||||||| || || || ||| || ||| Sbjct 25761 CAGCTACTCTCATCAACATATGTTGTGGTCGTTCTATCACTTTGCCATCCACA--CGTAA 25704 Query 26484 TCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCAT 26525 | ||||| || |||||||||||| |||||||| ||||||| Sbjct 25703 T-AAATAGGAACGTTCTAAAGTTTTGAATCCAAAGTAATCAT 25663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038664660475