Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq36 562 3e-155 >seq36 Length=158315 Score = 562 bits (622), Expect = 3e-155 Identities = 692/943 (73%), Gaps = 2/943 (0%) Strand=Plus/Plus Query 124048 TGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTT 124107 ||||| ||||| || ||||| |||||||| | ||||||||| ||||| || || || || Sbjct 26782 TGCTAAATCTAGAGGAAAGTTATGTGCATTACGTTCATGCATTACTTCTATTCCTAAATT 26841 Query 124108 TGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGA 124167 ||| | |||| || |||| |||| || | | | |||| | || ||||||||| || Sbjct 26842 TGCACGATTTAAAATATCAGCCCAAGTATTAATTACTCTTCCTTGAGAATCAACAACAGA 26901 Query 124168 TTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAA 124227 ||| ||||| || || ||||| ||||| ||||||||||||| |||||| | ||| || | Sbjct 26902 TTGATTAAAATTAAATCCATTTAAGTTAAATGCCATTGTGCTGATACCTAAAGATGTGAG 26961 Query 124228 CCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAA 124287 ||| | |||||| || || | | |||| |||||| || | | ||| || || || Sbjct 26962 CCAAATACATACTACTGGCCATAAAGCTAAGAAGAAATGTAATGAGCGTGAATTATTAAA 27021 Query 124288 TGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGT 124347 ||||| ||||| || | | ||||| ||||| || || || || ||||| || || Sbjct 27022 GCTTGCATATTGGAAAATTAATCTTCCAAAATAACCATGAGCAGCAACGATGTTATAAGT 27081 Query 124348 TTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCT 124407 ||| | |||||| || || |||||||||| ||| ||||| | |||||||||||| | Sbjct 27082 TTCATATTCTTGGCCAAATTTATAACCATTGTTTGCAGACTCATTCTCTGTTGTTTCACG 27141 Query 124408 GATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACAT 124467 || | | || || |||||||| || |||||||| ||||| || ||||| || | Sbjct 27142 TATCAAACTTGAAGTTACAAGAGAGCCGTGCATTGCACTAAATAATGAACCTCCAAATAC 27201 Query 124468 TCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAAC 124527 || || || || ||| || || |||||||||| ||| ||||| || ||||||||||| Sbjct 27202 ACCAGCAACACCCATCATATGAAACGGATGCATTAAAATATTATGTTCAGCTTGGAAAAC 27261 Query 124528 GAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTG 124587 |||||||| || |||||||| || ||||| | |||||||||||| || || ||| || Sbjct 27262 TAACATAAAATTAAAAGTACCAGAAATACCTAATGGCATACCATCTGAAAAACTACCTTG 27321 Query 124588 ACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAAC 124647 |||| || || | | |||||||| || |||| || || ||||| |||| || Sbjct 27322 TCCAATAGGATAGATAATAAATACAGCTGTGGCTGCAGCAACAGGAGCTGAGAAAGCTAC 27381 Query 124648 ACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGC 124707 ||||||||||||||||| | | || || |||||| | | |||||| ||||| Sbjct 27382 GGCTATCCAAGGACGCATTCCAAGACGATAGCTTAATTCCCATTCACGTCCCATATATGC 27441 Query 124708 TGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCA 124767 |||| ||||||| |||||| |||| || || | ||||||||| |||||||| | ||| Sbjct 27442 ACAAATTCCAATAAAGAAGTGCAAAACTATTAATTCATAAGGACCGCCATTATATAGCCA 27501 Query 124768 TTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGA 124827 |||||| | || |||||||||||| || || ||||| |||| ||| || || || |||| Sbjct 27502 TTCATCTAAAGATGCTGCTTCCCAAATAGGATAGAAATGTATTCCTATTGCATTAGATGT 27561 Query 124828 TGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTC 124887 || |||| ||||||| || || || || |||||||| || || || | |||||||| Sbjct 27562 AGGTACAATAGCACCAGTTATAATATTATTTCCATATAACAATGATCCTGAAACTGGTTC 27621 Query 124888 TCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTG 124946 ||| || ||||| ||||| || || || || || |||||| ||| || || ||| | || Sbjct 27622 TCTAATACCGTCTATATCAACTGGTGGAGCAGCTATAAATCCAATTATAAATACA-GATG 27680 Query 124947 CTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACC 124989 ||||| ||||| || ||||||| || ||||||||||| Sbjct 27681 TAGCTGTTAGTAATGTAGGGATCATTAATACTCCAAACCAACC 27723 Score = 491 bits (544), Expect = 5e-134 Identities = 738/1050 (70%), Gaps = 25/1050 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| || || || | |||||| || || ||||||||||||||||| ||||| ||||| Sbjct 40793 TTAAAGGGCATTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGGTTG 40734 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || | || |||||||||||| || |||||||| ||||| | || || ||||| || Sbjct 40733 ATCTTGTGTTGCCATCCATGCTCTTATACCTTCATTTAGAAGTAAATTTTTAGTATAAAA 40674 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || |||||||| ||||| || | || |||||||| ||||| || ||||| | Sbjct 40673 AGTCTCAAATTCTGGGTCCTCTGCGGCACGTAATTCTTGAGAGACAAAATCATATGCACG 40614 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 | || | ||| || |||| |||||| ||||| |||||| | || | || || || Sbjct 40613 TAAATTTAATGCAAGTCCTATGATACCAATAGAGCTTGTCCATAATCCTGTAACTGGCAC 40554 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || | ||||| || |||| ||||||||||||||||||| | |||||| || ||||| Sbjct 40553 AAATAGCATAAAAAAATGTAGCCATCTTTTGTTAGAAAATGCAACACCAAAAATTTGTGA 40494 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | || || |||| ||| ||||||||| ||| ||||| || || || Sbjct 40493 CCAAAAACGATTAGCCGTAACCATTGAATAAGTTTCCTCTGATTGTGTTGGTGTAAAAGC 40434 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 |||||||| ||| | |||| || |||| | ||||| Sbjct 40433 CCTGAAAGTATTAGC---------AGCTTCGCCAT------------CTTCGAATAATGT 40395 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 |||| || || || |||||||| ||||| ||||||||||| || |||||||| ||||| Sbjct 40394 ATTCTCTACAGTCGCTCCATGAATAGCACAAAGTAATGCTCCTCCGAGTATTCCAGCAAC 40335 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 ||||||||| ||||||||||| || || || ||||||||||||| ||||| ||| | Sbjct 40334 ACCCATCATATGAAATGGATTTAAAGTCCAATTATGGAAACCTTGTAAAAATAAAATAAA 40275 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 |||||||| ||||| || || || || || || |||||||| || || ||||| Sbjct 40274 TCGAAAGATAGCTGCAACTCCAAAACTAGGAGCAAAAAACCAACTAGCTTGCCCAAGTGG 40215 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || ||||| | | || ||||| || | || || || | ||| ||||| Sbjct 40214 ATAAATAAGAAATACTGAAACAAAAACTGCAATTGGTCCTGAAAAAGCTATTGCATTGTA 40155 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 || ||||| || || | || || || |||||||| | | |||||||| | | Sbjct 40154 TGGCCTAATTCCGACTAATCTGGCTATTTCAAATTGACGCAAACAAAAACCTATCAAGGC 40095 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 ||| | |||||||| || ||| |||| |||||||| | ||| |||| | | || Sbjct 40094 AAAAGCACCATGTAAAGCAGTAAAAGTCCAAAGACCTCCAATTTGACACCATCTAGTAAA 40035 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACT--ATGACCCATTGCGTCACCA 123703 ||||| ||||| |||||||| | || || | | | || ||||| | || Sbjct 40034 ATCACCTTGAGCTTCTGGTCCCCATA--AAAATAATAATGAGTGTCCCATACTATTTGCA 39977 Query 123704 GGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCA 123763 || | || ||||| || ||||| || || ||| || | ||| ||||| || | |||| Sbjct 39976 GGACTTGATACTGCAGCGGTTAAAAAATTACATCCTTCTAAATAAGAAGAAGCTAAACCA 39917 Query 123764 TGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATAC 123823 || |||||||| || ||||| || || || ||| ||||| |||| | | |||||| Sbjct 39916 TGCGTATACCAAGAAGTAACAAAAGTTGTACCTGTAAACCAGGCACCTAGAGCTAGATAT 39857 Query 123824 GCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAAC 123883 | ||| || | ||||| | ||| |||||||| || || ||||| ||||| | |||| | Sbjct 39856 GAACATGGAAAAAGTAGCAAACCTGACCATCCAATAAAGACAAATCGATCACGTTTTAGC 39797 Query 123884 CAGTCGTCAAGAACATCAAACCAACCTCTT 123913 || || |||| | || ||||| |||||| Sbjct 39796 CAATCATCAACTAAGTCGAACCACCCTCTT 39767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578995266171160