Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq36 471 6e-128 >seq36 Length=158315 Score = 471 bits (522), Expect = 6e-128 Identities = 664/930 (71%), Gaps = 2/930 (0%) Strand=Plus/Plus Query 26746 GGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGA 26805 ||||| ||||| || || | ||| || || || |||| ||| | | ||||| || | | Sbjct 26795 GGAAAGTTATGTGCATTACGTTCATGCATTACTTCTATTCCTAAATTTGCACGATTTAAA 26854 Query 26806 ACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTG 26865 | || |||||||| || | || | || || ||||||| ||||| ||||| || || Sbjct 26855 ATATCAGCCCAAGTATTAATTACTCTTCCTTGAGAATCAACAACAGATTGATTAAAATTA 26914 Query 26866 AAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACA 26925 || || || | || || ||||| ||| | ||| | | |||| ||| || | || Sbjct 26915 AATCCATTTAAGTTAAATGCCATTGTGCTGATACCTAAAGATGTGAGCCAAATACATACT 26974 Query 26926 ACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGG 26985 || |||||| ||| | |||||| || || || ||||| || || || ||||||||| Sbjct 26975 ACTGGCCATAAAGCTAAGAAGAAATGTAATGAGCGTGAATTATTAAAGCTTGCATATTGG 27034 Query 26986 AAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGA 27045 || || || | || || || ||||| || || |||||||| || || || | |||||| Sbjct 27035 AAAATTAATCTTCCAAAATAACCATGAGCAGCAACGATGTTATAAGTTTCATATTCTTGG 27094 Query 27046 CCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGAT 27105 || || |||||||||| ||| |||||| | || || || ||||| | | || Sbjct 27095 CCAAATTTATAACCATTGTTTGCAGACTCATTCTCTGTTGTTTCACGTATCAAACTTGAA 27154 Query 27106 GTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCG 27165 || || ||| |||||||| ||| || | || || || ||||| ||||||||||| Sbjct 27155 GTTACAAGAGAGCCGTGCATTGCACTAAATAATGAACCTCCAAATACACCAGCAACACCC 27214 Query 27166 AGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTA 27225 | ||| || ||||| ||||| | ||||| ||||| || ||||| || | ||| | ||| Sbjct 27215 ATCATATGAAACGGATGCATTAAAATATTATGTTCAGCTTGGAAAACTAACATAAAATTA 27274 Query 27226 AAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAG 27285 ||||||||||| ||||| | |||||| |||| || ||| |||||| || | ||||||| Sbjct 27275 AAAGTACCAGAAATACCTAATGGCATACCATCTGAAAAACTACCTTGTCCAATAGGATAG 27334 Query 27286 ACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGA 27345 | | ||||| || | || ||||| || ||||| || | ||||| ||||| ||| Sbjct 27335 ATAATAAATACAGCTGTGGCTGCAGCAACAGGAGCTGAGAAAGCTACGGCTATCCAAGGA 27394 Query 27346 CGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGATGCCGATA 27405 ||||| || | |||||| | |||||| |||||||||||||| ||| | || || ||| Sbjct 27395 CGCATTCCAAGACGATAGCTTAATTCCCATTCACGTCCCATATATGCACAAATTCCAATA 27454 Query 27406 AGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGAT 27465 | |||||| || |||| | || ||||||| || ||||| | ||| ||||| | ||| Sbjct 27455 AAGAAGTGCAAAACTATTAATTCATAAGGACCGCCATTATATAGCCATTCATCTAAAGAT 27514 Query 27466 GCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCA 27525 ||||||||||| || || ||||| || | || |||||||| || | || |||| ||| Sbjct 27515 GCTGCTTCCCAAATAGGATAGAAATGTATTCCTATTGCATTAGATGTAGGTACAATAGCA 27574 Query 27526 CCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCA 27585 |||| || || || || ||||| | | ||| || | ||| ||||| | ||||||||| Sbjct 27575 CCAGTTATAATATTATTTCCATATAACAATGATCCTGAAACTGGTTCTCTAATACCGTCT 27634 Query 27586 ATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGCTGCTAACAG 27644 ||||| || ||||| || || || ||| | | || || |||| || |||| || | Sbjct 27635 ATATCAACTGGTGGAGCAGCTATAAATCCAATTATAAATACAGA-TGTAGCTGTTAGTAA 27693 Query 27645 TGTTGGGATCATCAGTACACCGAACCAACC 27674 ||| |||||||| | ||| || |||||||| Sbjct 27694 TGTAGGGATCATTAATACTCCAAACCAACC 27723 Score = 426 bits (472), Expect = 2e-114 Identities = 687/985 (70%), Gaps = 2/985 (0%) Strand=Plus/Minus Query 23429 AAAGTTTTCGTGTGGTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAA 23488 ||| ||||| |||||||| || || ||||||| | | | || | || | | Sbjct 40751 AAAATTTTCATGTGGTTGATCTTGTGTTGCCATCCATGCTCTTATACCTTCATTTAGAAG 40692 Query 23489 AATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACT 23548 | |||||| || || || |||||| | || || || ||||| | |||||| Sbjct 40691 TAAATTTTTAGTATAAAAAGTCTCAAATTCTGGGTCCTCTGCGGCACGTAATTCTTGAGA 40632 Query 23549 CACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCA 23608 ||||||||||| ||||| | ||| | ||||| || ||||| |||||||| ||| Sbjct 40631 GACAAAATCATATGCACGTAAATTTAATGCAAGTCCTATGATACCAATAGAGCTTGTCCA 40572 Query 23609 AAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGC 23668 | || | || || ||||| | |||||| || || | ||| | || || ||| || Sbjct 40571 TAATCCTGTAACTGGCACAAATAGCATAAAAAAATGTAGCCATCTTTTGTTAGAAAATGC 40512 Query 23669 AACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTC 23728 ||| || || |||||||||||||||||||| || |||||||| ||||| || ||||| Sbjct 40511 AACACCAAAAATTTGTGACCAAAAACGATTAGCCGTAACCATTGAATAAGTTTCCTCTGA 40452 Query 23729 CTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATT 23788 || || | || || | ||||| || || ||| |||||||| | | |||||| Sbjct 40451 TTGTGTTGGTGTAAAAGCCCTGAAAGTATTAGCAGCTTCGCCATCTTCGAATAATGTATT 40392 Query 23789 CTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCC 23848 ||| ||||| |||||||||||||| | || | ||||||||| ||||| |||||||| || Sbjct 40391 CTCTACAGTCGCTCCATGAATAGCACAAAGTAATGCTCCTCCGAGTATTCCAGCAACACC 40332 Query 23849 CATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCT 23908 ||||||||| || || || | ||||| ||||| || || || | || | || || | Sbjct 40331 CATCATATGAAATGGATTTAAAGTCCAATTATGGAAACCTTGTAAAAATAAAATAAATCG 40272 Query 23909 GAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATA 23968 || || || ||||| || ||||| || ||||| |||||| | || || | ||||| Sbjct 40271 AAAGATAGCTGCAACTCCAAAACTAGGAGCAAAAAACCAACTAGCTTGCCCAAGTGGATA 40212 Query 23969 GATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGG 24028 || || ||||| || || || || ||||| || || |||||||| || |||||||| || Sbjct 40211 AATAAGAAATACTGAAACAAAAACTGCAATTGGTCCTGAAAAAGCTATTGCATTGTATGG 40152 Query 24029 ACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAA 24088 | ||||| | || | || | |||||| ||||| || ||||||||| | ||||| Sbjct 40151 CCTAATTCCGACTAATCTGGCTATTTCAAATTGACGCAAACAAAAACCTATCAAGGCAAA 40092 Query 24089 GGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTC 24148 ||||| || | |||| ||| | |||||| ||||||| ||| ||| | ||| || Sbjct 40091 AGCACCATGTAAAGCAGTAAAAGTCCAAAGACCTCCAATTTGACACCATCTAGTAAAATC 40032 Query 24149 CCCTTGAGACTCAGGACCCCA-AAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCG 24207 ||||||| || || ||||| || | || || || || |||||| | ||||| Sbjct 40031 ACCTTGAGCTTCTGGTCCCCATAAAAATAATAA-TGAGTGTCCCATACTATTTGCAGGAC 39973 Query 24208 TCGAGACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGG 24267 | || || || || || | ||| ||| || || | ||| ||| ||| | ||||| | Sbjct 39972 TTGATACTGCAGCGGTTAAAAAATTACATCCTTCTAAATAAGAAGAAGCTAAACCATGCG 39913 Query 24268 TGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAG 24327 | |||||| |||||||||| ||| || |||| ||| | || | || ||||| | | Sbjct 39912 TATACCAAGAAGTAACAAAAGTTGTACCTGTAAACCAGGCACCTAGAGCTAGATATGAAC 39853 Query 24328 TGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGT 24387 |||| |||||| | || ||||| || | ||||||||| ||||| ||||| | ||| | Sbjct 39852 ATGGAAAAAGTAGCAAACCTGACCATCCAATAAAGACAAATCGATCACGTTTTAGCCAAT 39793 Query 24388 CGTCCAAGATGTCAAACCATCCCCT 24412 | || | | ||| ||||| || || Sbjct 39792 CATCAACTAAGTCGAACCACCCTCT 39768 Score = 143 bits (158), Expect = 4e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 |||||||| | |||| |||| | ||| | |||| |||||||||||||| || || ||| Sbjct 69891 TCTTCTTGATGAGTTAAAATTGTTGCATTACAAGTAGGATATGCAACACATGTTAGGACA 69832 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 || ||| ||| | ||||||||||| | || ||||||||| ||| |||||| || Sbjct 69831 AATCCTGCTTTTACCTGATCATCATCTAGAAATGACTGATCAGATTGATCTACTTGTCCT 69772 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || | ||||||||||||| ||||| || ||||| | |||||| ||| || ||| Sbjct 69771 TCTAACAGTTTACCTGCACAAGTAGAACATGCTCCTGCTCTACAAGAATAGGGTAGATCT 69712 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATCAGCACA 32847 | || ||| || |||||||| | || ||||||||||||| ||| Sbjct 69711 AATCCTTGTTCTTCAGCTGCATCTAATATATATTGATCATCAGGACA 69665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665490798011560