Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq26 131 2e-25 seq19 127 2e-24 seq6 104 3e-17 seq8 87.8 2e-12 >seq26 Length=183063 Score = 131 bits (144), Expect = 2e-25 Identities = 333/501 (66%), Gaps = 7/501 (1%) Strand=Plus/Minus Query 64713 TTGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCCTGAATGA 64772 ||||||||| |||||| | ||||| || | || | || || ||||||| |||||| Sbjct 77612 TTGGACTGCTGAAGAAATAGATTTATCGAGTGACTTGGAAGATTGGAAGAAATTGAATGC 77553 Query 64773 AAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGT 64832 | |||| | ||||| || | |||| |||||||| ||||| |||||||| Sbjct 77552 AGATGAGCGCCATTTCATTTCTCACGTATTGGCTTTCTTTGCATCTTCCGACGGAATTGT 77493 Query 64833 TTTTGAGAATATCA-ATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCAT 64891 ||| ||||| | | || |||||| | ||| || ||||| ||||| || | | Sbjct 77492 TTTGGAGAACCTTGCAGAAAGATTTTGTCG-TGATGTCCAGATTCCAGAAGCACGATGTT 77434 Query 64892 TCTACGCATATCAA-TGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTGATT 64950 | || | || |||| | || | |||| ||||| ||||| ||||| | || Sbjct 77433 TTTATGGATTTCAAATAGCA-ATGGAAAATATTCATTCGGAAACTTATTCTCTTCTTATC 77375 Query 64951 GACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTA 65010 || | || ||| |||| |||||| | ||||||||||| || || | | Sbjct 77374 GATACTTATATTCGAGATGCTCAAGAAAAGGCTCGTTTATTTGAAGCAATGGAACGTATT 77315 Query 65011 CCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCC 65070 || ||||||||||| ||||| | ||||| | | |||| | | | ||| ||| Sbjct 77314 CCTTGTATTGAGAAAAAGGCTCAGTGGGCTTTAAGATGGAT---CCAATCCTCTGCCTCT 77258 Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 || || ||||| | | || ||||| ||| ||||| || || || || || || || Sbjct 77257 TTTGCTGAGCGTTTAGTGGCATTTGCTGCTGTAGAGGGAATATTTTTTTCTGGTTCTTTT 77198 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 || | || | ||||||||| ||| | || || |||||||| | |||||| ||||| Sbjct 77197 TGTTCCATATTTTGGTTGAAAAAGAGAGGACTTATGCCAGGATTGACCTTCTCTAATGAG 77138 Query 65191 CTTATTTCCCGAGATGAGGGT 65211 |||||||| || ||||| ||| Sbjct 77137 CTTATTTCACGTGATGAAGGT 77117 >seq19 Length=190679 Score = 127 bits (140), Expect = 2e-24 Identities = 466/722 (65%), Gaps = 11/722 (2%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAG--CTATCTTCAAC 75185 || |||| | || || ||||||||| ||||||| || |||| |||| | || Sbjct 25650 CGAGACTTTTCTTATGATTACTTTGGATTCAAAAC--TTTAGAACGTTCCTATTTATTAC 25707 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | | ||||||| | || ||| ||||| | ||||| ||| | || || | || | Sbjct 25708 GTGTGGATGGCAAAGTGATAGAACGACCACAACATATGTTGATGAGAGTAGCTGTTGGTA 25767 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCC-AAGGTATG 75304 | ||| ||| ||| | || | || |||||||| || || | ||||| | || || Sbjct 25768 TTCACAAGGATGACTTGGAAGCAGTATTGGAGACTTATGATTATATGTCTCGAAAATACT 25827 Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGT 75364 || | ||| || |||| || | |||||||| ||||| |||||||| ||| | ||| | Sbjct 25828 TT-ACTCATGCTTCACCTACTTTATTCAATGCGGGTACTCCAAGACCTCAGTTATCCTCT 25886 Query 75365 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 75424 || ||||| | | | | || ||||| || | || || |||| ||| ||| || Sbjct 25887 TGTTTCCTATTAACTATGACTGAAGACTCCATTGAAGGAATTTATGATACT-TTAAAAAG 25945 Query 75425 -TGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGC 75483 ||||| || || || | ||||| |||||||| || | |||||| | | || Sbjct 25946 ATGTGCAGTTATTTCTAAAAGTGCTGGTGGTATTGGATTGGCAGTTCATGATATACGTGC 26005 Query 75484 CAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCG 75543 | |||||| |||||| || || ||||| || |||| ||| |||| |||||||| Sbjct 26006 AACCAAATCTTATATTCGAGGTACCAATGGAACTTCTAATGGCATTGTTCCTATGCTTCG 26065 Query 75544 CGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTC---GCAAGGGGTCCAT 75600 |||||||| | || || | ||||| |||||| || | | || || | | Sbjct 26066 AGTATTTAATGATACTGCAAGATATGTGGATCAAGGAGGAGGAAAAAGAAAAGGAGCTTT 26125 Query 75601 CGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAA 75660 || | || ||||| || |||||||||||||| | || || | || || || || Sbjct 26126 TGCTATTTATTTGGAGCCTTGGCATGCCGATATTTTTGAATTTTTAGATTTGAGAAAGAA 26185 Query 75661 CCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCT 75720 || || | ||||| ||| ||||| | |||| | ||| |||| || | Sbjct 26186 TCATGGAAAGGAAGAAAATCGAGCACGAGATTTGTTTTATGGTTTATGGGTTCCCGATTT 26245 Query 75721 TTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACC 75780 || ||||| | || || ||| || ||||| | | || ||||| | | || || Sbjct 26246 ATTTATGAAAAGAGTAGAAAAGGATGAGAAATGGAGTTTATTTTGTCCCAATGAAGCTCC 26305 Query 75781 AGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGA 75840 |||| | | || |||||| | |||||| || || |||||||||| |||| Sbjct 26306 AGGTTTGGCTGATTGTTGGGGTGAAGCATTTGAACAACTTTATGAAAAGTATGAAAAGGA 26365 Query 75841 GG 75842 || Sbjct 26366 GG 26367 >seq6 Length=291449 Score = 104 bits (114), Expect = 3e-17 Identities = 294/445 (66%), Gaps = 10/445 (2%) Strand=Plus/Minus Query 175192 GATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAG 175251 ||||||| || ||| | || |||| |||||||||||| |||| ||||| ||| Sbjct 227442 GATGTTGCAGGTTGTGATGGAGCAAAAGTGGAACTTGAAGAGGTTGTTTCATTTCTGAAG 227383 Query 175252 CAACCCGAGAGATATTTTGGAAGT-GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | | || | | || | | | || || ||||| || |||| | |||| | ||| Sbjct 227382 GATTCAGATCGTT-TTACGCAGCTAGGAGCAAAGATTCCAAGAGGAGTTATTCTTGAGGG 227324 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCC 175370 ||||| || ||||| || || || || |||| | || || ||| || || || Sbjct 227323 ACCACCAGGAACAGGAAAAACACTACTTGCAAGAGCTGTAGCTGGAGAAGCAGGAGTACC 227264 Query 175371 ATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAA 175428 || | | | ||| | || | ||||| ||||||||||||||||| || || | Sbjct 227263 CTTTTTGTCTATTGCA--GGTTCAGAGTTTGTTGAGATGTTTGTTGGTGTTGGCGCTAGT 227206 Query 175429 AGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGAT 175488 | ||||| ||| | |||| | ||| | ||| || |||||| | || |||||| Sbjct 227205 CGTGTTCGTGATTTATTTGCACAAGCCAAAAAGAATGCTCCTTGTATTATTTTTATTGAT 227146 Query 175489 GAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGA 175548 || || ||||| || || | |||| | | || ||| | | | |||||| || ||| Sbjct 227145 GAAATAGATGCAGTAGGTAGGCAAAGAGGAGCCGGTATTGCGGGCGGAAATGATGAAAGA 227086 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA--CAATGAGACTGGCA 175606 |||||||| | || ||| | || || || ||||| || || || ||| | | ||| | Sbjct 227085 GAACAAACTCTCAACCAATTGCTTACAGAAATGGACGGTTTCGAAGCAA--ACAATGGTA 227028 Query 175607 TTGTGGTTATTGCGGCCACTAATCG 175631 | | |||||||| || |||||||| Sbjct 227027 TCATTGTTATTGCAGCAACTAATCG 227003 >seq8 Length=268242 Score = 87.8 bits (96), Expect = 2e-12 Identities = 255/385 (66%), Gaps = 16/385 (4%) Strand=Plus/Minus Query 175216 AAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGG-AAG 175274 |||| |||||| |||| | || || ||| | |||| || ||| ||||| | ||| Sbjct 226817 AAAGTAGAACTTCAAGAAGTAGTTGAATTTGTTC-GCAATCC-AGAAATATTCTCACAAG 226760 Query 175275 T-GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCC 175333 | ||||| || | || |||||| | || | | |||| || || || |||||||| Sbjct 226759 TTGGTGCAAAAGTGCCTAGAGGCGTCATTTTGGAGGGTCCTCCTGGAACTGGAAAGACTT 226700 Query 175334 TCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGC 175391 | | ||| |||| | || |||||| | || | ||| | | | ||| | | Sbjct 226699 TGTTGGCCAGAGCAGTTGCAGGTGAAGCTGGAGTTGCTTTCTTTTCTATTGCA--GGTTC 226642 Query 175392 AAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAAT 175451 | | ||||| || ||||||||||| || ||||| | | ||||| || | |||| Sbjct 226641 AGAATTTGTAGAAATGTTTGTTGGAGTTGGTGCTAGTCGTGTTCGTGACTTATTTG---- 226586 Query 175452 CGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCA 175507 ||| || |||| || || |||||| | || |||||||| || || ||||| || | Sbjct 226585 CGCAAGCCAAAAAGAATGCTCCGTGTATTATTTTTATTGATGAAATAGACGCGGTAGGTA 226526 Query 175508 AGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAAC 175567 ||||| | || || | | || ||||| || ||||||||||| | ||||| Sbjct 226525 GACAACGAGGTGCAGGAGTTGCTGGAGGGAATGATGAAAGAGAACAAACTCTGAATCAGT 226466 Query 175568 TACTCACCGAGATGGATGGCTTTGA 175592 || | || || |||||||| ||||| Sbjct 226465 TATTGACGGAAATGGATGGGTTTGA 226441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566371067040