Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq36 508 7e-139 >seq36 Length=158315 Score = 508 bits (562), Expect = 7e-139 Identities = 731/1028 (71%), Gaps = 2/1028 (0%) Strand=Plus/Plus Query 167004 AAGGGGGTGGTTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGG 167063 ||| |||||||| || | | ||||| ||||| ||| | ||||| ||||| ||| |||| Sbjct 39767 AAGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGG 39826 Query 167064 CTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGG 167123 ||||| || | || |||||||| | | ||||| ||| | || | ||| |||| || Sbjct 39827 ATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGG 39886 Query 167124 GACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCGTCCAGTTATCTTGAGGGTGC 167183 || ||||| || || ||||||||| ||||| | || || |||| | || || Sbjct 39887 TACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATG 39946 Query 167184 GAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCT 167243 || ||| | || || ||||| | ||| ||| || |||||| || || ||| | | Sbjct 39947 TAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCATTATTATT 40006 Query 167244 TCTATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTG 167303 | ||||||| || ||| ||||||| ||||| || ||| ||| |||| || || || Sbjct 40007 TTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTTG 40066 Query 167304 GGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTT-CGACAGTTTG 167362 | ||||| || | || || || ||||| | || ||||| || || || || |||| Sbjct 40067 GACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTT-TGTTTGCGTCAATTTG 40125 Query 167363 AACTTGCTCGCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTG 167422 || | || | | | || || | || |||||||| || ||||| || || || |||| Sbjct 40126 AAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATTG 40185 Query 167423 CTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCC 167482 | || || ||| || || ||| | ||||| || || ||| || ||||| ||||| | Sbjct 40186 CAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCTC 40245 Query 167483 CGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACT 167542 | || ||||| || || ||||| ||||| | | || | ||||| ||||| || | Sbjct 40246 CTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAATT 40305 Query 167543 GGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTT 167602 |||| | ||||||||||||||||||||||| || || || || || || ||||| |||| Sbjct 40306 GGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTTT 40365 Query 167603 CTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACA 167662 ||| || ||||| | || ||||||||||| || | |||||||| || || || | Sbjct 40366 GTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTAATA 40425 Query 167663 CTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACC 167722 |||| | ||| || | || || ||| || ||||||||||||||||| || || | Sbjct 40426 CTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTAATC 40485 Query 167723 GATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTA 167782 | || ||||| || || || || |||| || |||||| | ||||| ||||| |||| Sbjct 40486 GTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTTTTA 40545 Query 167783 TGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTC 167842 || |||| || || |||| ||| | |||||| || ||||| ||||| || || || Sbjct 40546 TGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTTGCAT 40605 Query 167843 TTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGT 167902 | ||| | ||||| || ||||| || |||||||| | | || || ||||| ||||| | Sbjct 40606 TAAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCCAGAAT 40665 Query 167903 TTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCAC 167962 |||| ||||| ||||||||||| | ||||| ||||||||| | |||||||| | ||| Sbjct 40666 TTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATGGCAA 40725 Query 167963 CTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACG 168022 | |||||||| ||||| || ||||| ||||||||||| ||| | ||||| || || | Sbjct 40726 CACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATG 40785 Query 168023 CACTATAA 168030 | || ||| Sbjct 40786 CCCTTTAA 40793 Score = 452 bits (500), Expect = 4e-122 Identities = 683/969 (70%), Gaps = 2/969 (0%) Strand=Plus/Minus Query 165778 TGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTGATGATTCCA 165837 ||| |||| |||||| | || ||||| || | ||||||||||| | ||||| || Sbjct 27756 TGGATTACTAGCACAGAAAATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCT 27697 Query 165838 ACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGA 165896 || | | |||| || ||||| || || | | || || |||||||| || || || Sbjct 27696 ACATTACTAACAGCTAC-ATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGA 27638 Query 165897 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTC 165956 || ||||| || | ||||| || | || || || | ||||| || || || || | Sbjct 27637 TATAGACGGTATTAGAGAACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAAC 27578 Query 165957 TGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAAGC 166016 |||||| |||| || | || || ||||| || |||| |||||||| || |||||||| Sbjct 27577 TGGTGCTATTGTACCTACATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGC 27518 Query 166017 CGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTT 166076 ||||| | || |||||||| ||||| || ||||||| || | | || || ||||| Sbjct 27517 AGCATCTTTAGATGAATGGCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTT 27458 Query 166077 CCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTAT 166136 | | ||||| || | ||| || ||||| ||||| |||||| | || ||||| || || Sbjct 27457 CTTTATTGGAATTTGTGCATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAAT 27398 Query 166137 GCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCT 166196 |||||| ||||| || |||| |||||| || || ||||| || | || ||||| | Sbjct 27397 GCGTCCTTGGATAGCCGTAGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTAT 27338 Query 166197 AGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAAC 166256 | |||||| | || ||||||||||| || |||| |||||| | || || || || || Sbjct 27337 TATCTATCCTATTGGACAAGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTAC 27278 Query 166257 ATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATAT 166316 || || | ||||| || ||||||||||| || |||||| | |||||||| || ||||| Sbjct 27277 TTTTAATTTTATGTTAGTTTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATAT 27218 Query 166317 GCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGT 166376 | | || |||||||| |||||||| || || |||||||| |||||||| | | || Sbjct 27217 GATGGGTGTTGCTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGT 27158 Query 166377 TACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTT 166436 ||||| | | | | || || || || | || || |||| | ||||| || || Sbjct 27157 AACTTCAAGTTTGATACGTGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATT 27098 Query 166437 CGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGAT 166496 || |||||| | ||||| || |||||||| || ||||||||||| || || | || || Sbjct 27097 TGGCCAAGAATATGAAACTTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAAT 27038 Query 166497 CTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCC 166556 |||||||| || || || || || ||||| || || |||||| | ||| |||||| Sbjct 27037 TTTCCAATATGCAAGCTTTAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGCC 26978 Query 166557 TGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGG 166616 || || | || ||| |||| | | || || ||| |||||||| ||| | || || Sbjct 26977 AGTAGTATGTATTTGGCTCACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGG 26918 Query 166617 TTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGA 166676 || || || || || || | ||||| ||| || | || | || || ||||| || Sbjct 26917 ATTTAATTTTAATCAATCTGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGA 26858 Query 166677 TGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTT 166736 | || | || || || | | || || ||||| |||||||| ||||| ||||| ||||| Sbjct 26857 TATTTTAAATCGTGCAAATTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACTT 26798 Query 166737 CCCCCTCGA 166745 || || || Sbjct 26797 TCCTCTAGA 26789 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 18129 TCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAATC 18188 |||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||| Sbjct 28120 TCCTCAGTAGCTCAGCGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCAAATC 28179 Query 18189 CTACCTGGGGAGTT 18202 ||||||| |||||| Sbjct 28180 CTACCTGAGGAGTT 28193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561244962245200