Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq36 489 4e-134 >seq36 Length=158315 Score = 489 bits (542), Expect = 4e-134 Identities = 711/996 (71%), Gaps = 6/996 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 ||||| | |||||| ||| | ||| || | || ||||| || | || |||||| Sbjct 27774 TGGGAACGTTTTTGTTCTTGGATTACTAGCACAGAAAATCGTCTCTACATAGGTTGGTTT 27715 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 || || | ||||| || | || | ||||| | |||| ||||| | | || || Sbjct 27714 GGAGTATTAATGATCCCTACATTACTAACAGCTAC-ATCTGTATTTATAATTGGATTTAT 27656 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||||| || || || || || || || ||| | ||||| || || || || | | || Sbjct 27655 AGCTGCTCCACCAGTTGATATAGACGGTATTAGAGAACCAGTTTCAGGATCATTGTTATA 27596 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| || || || || ||||||| | || |||| ||| ||||| ||| ||||||| Sbjct 27595 TGGAAATAATATTATAACTGGTGCTATTGTACCTACATCTAATGCAATAGGAATACATTT 27536 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTT-GACGAATGGCTCTACAATGGCGGACCTTATC 42577 ||| | || |||||||| | | | || || |||||||| || |||||||| |||||| Sbjct 27535 CTATCCTATTTGGGAAGC-AGCATCTTTAGATGAATGGCTATATAATGGCGGTCCTTATG 27477 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 | | | || || |||||| |||| || || | | || ||||||| ||||||||| Sbjct 27476 AATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGCATATATGGGACGTGAATGGGAAT 27417 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 | || || ||||| ||| | || ||||| || |||| ||| || ||||| |||| Sbjct 27416 TAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGTAGCTTTCTCAGCTCCTGTTGCTG 27357 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 |||| || || || || || ||||||| |||| |||||| |||||||||||| |||| Sbjct 27356 CAGCCACAGCTGTATTTATTATCTATCCTATTGGACAAGGTAGTTTTTCAGATGGTATGC 27297 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 | | || ||||| ||||| || || || ||||| || ||||| ||||||||||| ||| Sbjct 27296 CATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGTTTTCCAAGCTGAACATAATATTT 27237 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 | |||||||| || |||||| | |||||||| || |||||||| || || || || | Sbjct 27236 TAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGTATTTGGAGGTTCATTATTTAGTG 27177 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 | ||||| || |||||| || || | | | |||||||| || || || || Sbjct 27176 CAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACGTGAAACAACAGAGAATGAGTCTG 27117 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 ||| |||| || || || || ||||| | || ||||||||||| ||||| || |||| Sbjct 27116 CAAACAATGGTTATAAATTTGGCCAAGAATATGAAACTTATAACATCGTTGCTGCTCATG 27057 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACT 43057 |||| |||||| | | || ||||||||||| ||||||||| ||||| || || | Sbjct 27056 GTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTTTAATAATTCACGCTCATTACATT 26997 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| | || ||||| || || | |||||| |||| ||| | || |||| || | Sbjct 26996 TCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCTCACATCTTTAGGTATCAGCACAA 26937 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATC-AGAATCAT 43176 |||| |||||||| ||||| ||||| ||||| ||||| |||||||| || || | | Sbjct 26936 TGGCATTTAACTTAAATGGATTTAATTTTAATCAATCTGTTGTTGATTCTCAAGGAAGA- 26878 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || || |||||||||||||||||| |||||||| || | || | || || ||||| Sbjct 26877 GTAATTAATACTTGGGCTGATATTTTAAATCGTGCAAATTTAGGAATAGAAGTAATGCAT 26818 Query 43237 GAGCGGAATGCACATAACTTCCCGCTTGATCTTGCA 43272 || || |||||||||||||| || || ||| | ||| Sbjct 26817 GAACGTAATGCACATAACTTTCCTCTAGATTTAGCA 26782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143532061972284