Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq36 545 3e-150 >seq36 Length=158315 Score = 545 bits (604), Expect = 3e-150 Identities = 745/1035 (72%), Gaps = 4/1035 (0%) Strand=Plus/Minus Query 66584 TTATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGG 66643 ||||||||| ||||| ||||| || | ||| || |||||||||||||| |||||||| || Sbjct 40796 TTATTAAAGGGCATTTCCACGTGGTAAAACCTCCTCTGGGAATACAAAATTTTCATGTGG 40737 Query 66644 TTGATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTA 66703 |||||| | ||||| |||||| | | ||||||||| | || | || || || || Sbjct 40736 TTGATCTTGTGTTGCCATCCATGCTCTTATACCTTCATTTAGAAGTAAATTTTTAGTATA 40677 Query 66704 GAACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGC 66763 || ||||| || |||||||| ||||| || | | ||||| || ||||| ||||| || Sbjct 40676 AAAAGTCTCAAATTCTGGGTCCTCTGCGGCACGTAATTCTTGAGAGACAAAATCATATGC 40617 Query 66764 ACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGG 66823 ||| | || | ||||| || || ||||| || || |||||||| | || |||| || Sbjct 40616 ACGTAAATTTAATGCAAGTCCTATGATACCAATAGAGCTTGTCCATAATCCTGTAACTGG 40557 Query 66824 AACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTG 66883 ||||| | |||||| ||||| | ||| || || || ||| |||| |||||| || || Sbjct 40556 CACAAATAGCATAAAAAAATGTAGCCATCTTTTGTTAGAAAATGCAACACCAAAAATTTG 40497 Query 66884 AGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAA 66943 ||||| || || || || ||||||||||| |||||||| || ||| || | || Sbjct 40496 TGACCAAAAACGATTAGCCGTAACCATTGAATAAGTTTCCTCTGATTGTGTTGGTGTAAA 40437 Query 66944 TGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACC 67003 || ||||||| || || ||| |||||||| | | ||||||||||| || | || Sbjct 40436 AGCCCTGAAAGTATTAGCAGCTTCGCCATCTTCGAATAATGTATTCTCTACAGTCGCTCC 40377 Query 67004 ATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGG 67063 |||||| ||| |||| ||||| || || || || || || ||||||||||||||||| || Sbjct 40376 ATGAATAGCACAAAGTAATGCTCCTCCGAGTATTCCAGCAACACCCATCATATGAAATGG 40317 Query 67064 GTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGAC 67123 || || ||||| |||||||| ||||||| || | || ||||||||||| |||| || Sbjct 40316 ATTTAAAGTCCAATTATGGAAACCTTGTAAAAATAAAATAAATCGAAAGATAGCTGCAAC 40257 Query 67124 CCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACT 67183 || ||| ||||| ||||||||||| | ||| || || || || || ||||| || Sbjct 40256 TCCAAAACTAGGAGCAAAAAACCAACTAGCTTGCCCAAGTGGATAAATAAGAAATACTGA 40197 Query 67184 AACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAG 67243 ||||||||| || || || || || || || || |||||||| || | || |||| | Sbjct 40196 AACAAAAACTGCAATTGGTCCTGAAAAAGCTATTGCATTGTATGGCCTAATTCCGACTAA 40137 Query 67244 ACGTGCCAGTTCAAACTGGCG-AAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCG 67302 | || | |||||| || || || || ||||| || | || ||||| || || | | Sbjct 40136 TCTGGCTATTTCAAATTGACGCAAACAA-AAACCTATCAAGGCAAAAGCACCATGTAAAG 40078 Query 67303 CCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAG 67362 | |||| |||| || ||||||| ||| ||| | ||||| || |||| || | Sbjct 40077 CAGTAAAAGTCCAAAGACCTCCAATTTGACACCATCTAGTAAAATCACCTTGAGCTTCTG 40018 Query 67363 GACCCCA-AAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCT 67421 | ||||| || | || || || || |||||| || ||||| |||| || || || Sbjct 40017 GTCCCCATAAAAATAATAAT-GAGTGTCCCATACTATTTGCAGGACTTGATACTGCAGCG 39959 Query 67422 GTGAGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTG 67481 || | ||||||| || || | |||| ||| || | || || || ||||| || Sbjct 39958 GTTAAAAAATTACATCCTTCTAAATAAGAAGAAGCTAAACCATGCGTATACCAAGAAGTA 39899 Query 67482 ACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGT 67541 ||||| || ||||| |||| |||| |||| | || | ||| | | |||||||| || Sbjct 39898 ACAAAAGTTGTACCTGTAAACCAGGCACCTAGAGCTAGATATGAACATGGAAAAAGTAGC 39839 Query 67542 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGGACATCG 67601 | || ||||| || | ||||||||| ||||| ||||| ||||| ||||||| | ||| Sbjct 39838 AAACCTGACCATCCAATAAAGACAAATCGATCACGTTTTAGCCAATCATCAACTAAGTCG 39779 Query 67602 AACCACCCCCGTTGT 67616 |||||||| | |||| Sbjct 39778 AACCACCCTCTTTGT 39764 Score = 518 bits (574), Expect = 4e-142 Identities = 698/969 (72%), Gaps = 2/969 (0%) Strand=Plus/Plus Query 67849 TCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCGG 67908 || ||||| ||||| ||||| ||||| |||||||| ||||| || || ||| || || Sbjct 26789 TCTAGAGGAAAGTTATGTGCATTACGTTCATGCATTACTTCTATTCCTAAATTTGCACGA 26848 Query 67909 TTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTTG 67968 || | || || ||||| ||| | || | || | ||||| | ||| || || Sbjct 26849 TTTAAAATATCAGCCCAAGTATTAATTACTCTTCCTTGAGAATCAACAACAGATTGATTA 26908 Query 67969 AAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCAGATA 68028 || || || ||||| | ||| |||||||| ||||| | ||| | | |||| ||| ||| Sbjct 26909 AAATTAAATCCATTTAAGTTAAATGCCATTGTGCTGATACCTAAAGATGTGAGCCAAATA 26968 Query 68029 CCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCA 68088 | || || |||||| ||| | |||||| || | || || || || || || |||| Sbjct 26969 CATACTACTGGCCATAAAGCTAAGAAGAAATGTAATGAGCGTGAATTATTAAAGCTTGCA 27028 Query 68089 TACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCT 68148 || ||||| || | | || || || ||||| |||||||| ||||| ||||| || | | Sbjct 27029 TATTGGAAAATTAATCTTCCAAAATAACCATGAGCAGCAACGATGTTATAAGTTTCATAT 27088 Query 68149 TCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGT 68208 ||||| || || || ||||||| ||| |||||| | || || |||||||| | || Sbjct 27089 TCTTGGCCAAATTTATAACCATTGTTTGCAGACTCATTCTCTGTTGTTTCACGTATCAAA 27148 Query 68209 GAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCA 68268 ||||| || || || || ||||||||||| || | || || |||||||| |||||| Sbjct 27149 CTTGAAGTTACAAGAGAGCCGTGCATTGCACTAAATAATGAACCTCCAAATACACCAGCA 27208 Query 68269 ACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATG 68328 || || | |||||| || || ||||| | || || || || |||||||| || | ||| Sbjct 27209 ACACCCATCATATGAAACGGATGCATTAAAATATTATGTTCAGCTTGGAAAACTAACATA 27268 Query 68329 TAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAA 68388 | || |||||||||||||| || | ||||| | || || || |||||| || | | Sbjct 27269 AAATTAAAAGTACCAGAAATACCTAATGGCATACCATCTGAAAAACTACCTTGTCCAATA 27328 Query 68389 GGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATC 68448 ||||||| | || || || | ||||| |||||||| || ||| | || || ||| Sbjct 27329 GGATAGATAATAAATACAGCTGTGGCTGCAGCAACAGGAGCTGAGAAAGCTACGGCTATC 27388 Query 68449 CAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAGATA 68508 ||||||||||| |||||||||||| | |||||||||||||||||| |||||| | || Sbjct 27389 CAAGGACGCATTCCAAGACGATAGCTTAATTCCCATTCACGTCCCATATATGCACAAATT 27448 Query 68509 CCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCATCA 68568 ||||| | |||||| || | || | || ||||||| ||||| || | ||| ||||| Sbjct 27449 CCAATAAAGAAGTGCAAAACTATTAATTCATAAGGACCGCCATTATATAGCCATTCATCT 27508 Query 68569 AGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACA 68628 | | ||||||||||||||| ||||| || || | || |||||||| || |||| ||| Sbjct 27509 AAAGATGCTGCTTCCCAAATAGGATAGAAATGTATTCCTATTGCATTAGATGTAGGTACA 27568 Query 68629 ACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATA 68688 | |||||||| || || || || ||||| | | ||| || | ||| ||||| | |||| Sbjct 27569 ATAGCACCAGTTATAATATTATTTCCATATAACAATGATCCTGAAACTGGTTCTCTAATA 27628 Query 68689 CCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTGC 68747 || || || || || || |||||||| || || | | || || |||||| || |||| Sbjct 27629 CCGTCTATATCAACTGGTGGAGCAGCTATAAATCCAATTATAAATACAGAT-GTAGCTGT 27687 Query 68748 AAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGA 68807 || | ||||||||||| | || || |||||||| | ||| || || || |||||| Sbjct 27688 TAGTAATGTAGGGATCATTAATACTCCAAACCAACCTATGTAGAGACGATTTTCTGTGCT 27747 Query 68808 AGTCACCCA 68816 ||| | ||| Sbjct 27748 AGTAATCCA 27756 Score = 111 bits (122), Expect = 2e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 35508 TAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCG 35567 ||||||| ||||||||||||||||||||||||||||| ||||||| ||| ||||| ||| Sbjct 28194 TAACTCCTCAGGTAGGATTTGAACCTACGACCAATCGGTTAACAGCCGACCGCTCTACCG 28135 Query 35568 CTGAGCTACTGAGGAT 35583 |||||||||||||||| Sbjct 28134 CTGAGCTACTGAGGAT 28119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572051303755560