Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq6 176 8e-39 seq54 161 2e-34 seq9 140 6e-28 seq63 125 1e-23 >seq6 Length=291449 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||| || | | |||| ||| || |||| |||||| |||||||| || Sbjct 274548 ATACCTCCTCTTAACCTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCA 274489 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||||| || || || || |||||||||||||| | |||||||||||| ||| Sbjct 274488 GAAAGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGA 274429 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| || |||| ||| | |||| || ||||| |||| ||| Sbjct 274428 GGAATACCTTCTTTATCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCA 274369 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||||| ||||| || || | |||||| |||||||||||||| Sbjct 274368 ACTTCCAATGTTATGGTTTTTCCAGTCAACGTTTTCACAAATATTTGCAT 274319 >seq54 Length=107229 Score = 161 bits (178), Expect = 2e-34 Identities = 178/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || || ||||| || || |||| || | || | |||||| ||||||| Sbjct 11236 ATTTGCATTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCTTTCTGAATATTA 11295 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| |||| || | | || || | |||||| || ||||| ||||| | ||||| Sbjct 11296 TAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGG 11355 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| |||||||||||||||||||| || | || | || ||||||||| ||| Sbjct 11356 TCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAA 11415 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || ||||| ||||| ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 11416 GGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11472 Score = 161 bits (178), Expect = 2e-34 Identities = 178/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || || ||||| || || |||| || | || | ||| || ||||||| Sbjct 11464 ATTTGCATTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTA 11523 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| |||| || | | || || | |||||| || ||||| ||||| | ||||| Sbjct 11524 TAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGG 11583 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| |||||||||||||||||||| || | || | ||| ||||||||| ||| Sbjct 11584 TCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACATTCTCAATAGTATCAGAA 11643 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || ||||| ||||| ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 11644 GGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11700 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 |||| ||||||| || | |||| || | || | |||||| |||||||||||| | Sbjct 11015 TACCTCCTCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTG 11074 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 ||| || | | || || | |||||| || ||||| ||||| | ||||| ||||||| Sbjct 11075 ATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAG 11134 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | |||||||||||||||||||| || | || | || ||||||||| |||| || | Sbjct 11135 GAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTA 11194 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||| ||||| ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 11195 CTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11244 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || || ||||| || || |||| || | || | ||| || ||||||| Sbjct 11692 ATTTGCATTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTA 11751 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| |||| || | | || || | |||||| || ||||| ||||| | ||||| Sbjct 11752 TAGTCCGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGG 11811 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| |||||||||||||||||||| || | || | || ||||||||| ||| Sbjct 11812 TCGGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAA 11871 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || ||||| ||||| ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 11872 GGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11928 >seq9 Length=249065 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || || ||||| || | |||| || | |||| |||||| |||||||||||| || Sbjct 144634 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGAC 144575 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | | ||| || || ||||| || |||||||| || | ||||| || || || Sbjct 144574 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144515 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||| || ||||| || |||| || | |||| ||||||||| || | |||||| Sbjct 144514 ATACCTTCCTTGTCTTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAACT 144455 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| || || || || || || |||||||| ||||| Sbjct 144454 TCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATCTGCAT 144408 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || ||||| || | |||| || | |||| |||||| |||||||||||| Sbjct 144409 ATGCCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCT 144350 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | | ||| || || ||||| || |||||||| || | ||||| || || Sbjct 144349 GACAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGG 144290 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | ||| ||||||||| || | ||| Sbjct 144289 GGAATACCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCA 144230 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| ||||| || || || || || || |||||||||||||| Sbjct 144229 ACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 144180 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || || ||||| || | |||| || | |||| |||||| |||||| Sbjct 144187 ATTTGCATGCCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTG 144128 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || || || | ||| || || ||||| || |||||||| || | ||||| Sbjct 144127 TAGTCTGACAAAGTACGGCCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGG 144068 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| || || | || | ||| ||||||||| || Sbjct 144067 TCTGGGGGAATGCCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAG 144008 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | |||||||| ||||| ||||| || || || || || || ||||||||||||||| Sbjct 144007 GGTTCAACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCATT 143951 >seq63 Length=104598 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||||| ||||| || | ||||| |||||||| || || || ||||| ||| || Sbjct 60746 TACCAAGTGCAAAGTGGATTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTC 60687 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 || ||| || || ||||| || || | |||||||| ||||| || ||||| || ||||| Sbjct 60686 TAGTTGCTTGCCTGCAAATATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTG 60627 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||| |||| |||| ||| |||||||||||||| ||||||||| | ||| || || || Sbjct 60626 TATCTTGGACTTTACGTTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTAATGGTCTT 60567 Query 193331 ACCTGTTAGCGT 193342 || || || || Sbjct 60566 CCCAGTAAGTGT 60555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899649530620560