Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq26 181 2e-40 seq6 178 2e-39 seq62 159 5e-34 seq9 145 1e-29 seq54 143 4e-29 seq63 116 5e-21 >seq26 Length=183063 Score = 181 bits (200), Expect = 2e-40 Identities = 362/536 (68%), Gaps = 5/536 (1%) Strand=Plus/Plus Query 18147 AATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTAC 18206 |||||| |||||| ||||| ||| || ||||||||||| | || || | || ||| Sbjct 77086 AATATAGTAAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAG 77145 Query 18207 TAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTAC 18266 || || || || ||||| | ||||| ||||| | ||||||||| || ||| || Sbjct 77146 AGAAGGTCAATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAAC 77205 Query 18267 TAGAAAAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTAT 18325 |||||| ||||| ||||| || ||| || || || | ||| | ||||||||| | Sbjct 77206 CAGAAAAAAATATTCCCTCTACAGCA-GCAAATGCCACTAAACGCTCAGCAAAAGAGGC- 77263 Query 18326 TTATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTC 18385 | | | |||||| || ||||| | | | ||||| || |||| Sbjct 77264 --AGAGGATTGGATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGT 77321 Query 18386 TCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAAC 18445 || || || | ||| ||| | | ||||||| | |||| |||||||| ||||| | Sbjct 77322 TCCATTGCTTCAAATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGA 77381 Query 18446 AAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTA 18505 | |||||| |||| ||||| || ||||||| ||||| ||||| | |||||| ||| Sbjct 77382 AGAGAATAAGTTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGT 77441 Query 18506 GCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCG 18565 || || ||| || | || | | ||||||||||| | | ||||| ||| || ||| Sbjct 77442 GCTTCTGGAATCTGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCG 77501 Query 18566 TCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGA 18625 || | |||||| || || ||||| || | ||||||||| |||| | || | Sbjct 77502 TCGGAAGATGCAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAAT 77561 Query 18626 TTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681 || ||||| || || | || | |||| ||| | |||||| | ||||||||||| Sbjct 77562 TTCTTCCAATCTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGA 77617 >seq6 Length=291449 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| |||||||||||||| || ||||| ||||| ||| |||| Sbjct 274319 ATGCAAATATTTGTGAAAACGTTGACTGGAAAAACCATAACATTGGAAGTTGAACCTTCT 274378 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| |||||| || || |||||||||||||| || |||||||| ||| Sbjct 274379 GATACAATCGAAAATGTGAAATCCAAGATTCAAGATAAAGAAGGTATTCCTCCAGATCAA 274438 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | |||| |||||| |||||| | ||||| ||||| | || ||||||||| Sbjct 274439 CAGAGACTTATTTTTGCCGGAAAGCAGTTGGAAGACGGAAGAACGCTTTCTGATTATAAT 274498 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || | ||||| || || || |||||||| ||| Sbjct 274499 ATCCAGAAAGAGTCTACTTTACATTTGGTTTTGAGGTTAAGAGGAGGT 274546 >seq62 Length=89227 Score = 159 bits (176), Expect = 5e-34 Identities = 351/525 (67%), Gaps = 9/525 (2%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| ||| || || |||||||||| ||||| || || || || || | Sbjct 48132 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAGAAAGTAAGA 48191 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | || | ||| |||| ||||||||| || ||| || |||||||||| Sbjct 48192 CCAGGCATCAAGCCCCGTTTCTTTAACCAAAATATGGAACAAAAAGAACCAGAAAAGAAT 48251 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCA-- 18335 || || || || || || || | ||| | |||||||||||| | | || Sbjct 48252 ATCCCTTCTACTGCTGCAAAGGCAACTAAACGCTCAGCAAAACTGC-----TGGAACATC 48306 Query 18336 GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 ||||||||||| | ||| || ||| | ||| | | | | || || || | Sbjct 48307 GTATCCATTTTAAAGACCAATCCGCTTTCTTTTTCACACAAGTAAGATTTTCGATGGCGT 48366 Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455 |||||| | |||||| |||| |||||||| ||||| | |||| |||| Sbjct 48367 AGAACAAACGACGCTTTTCTGCCATATCTCGAATATAAGTATCGATAAGTAAAGCGTACA 48426 Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGAT 18515 |||| ||||||| |||||||||| |||||||||| ||| || | | || ||||| Sbjct 48427 TTTCCGAATGTACATTTTCCATAGCCATCTGAAAACCATAGAAACAACGCGCTTCGGGTA 48486 Query 18516 ATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575 ||||| || || ||| | || |||| || ||||| || || || |||| || || Sbjct 48487 CTTGAACTTCAGTACTAAAACGAGCTGCCAAGTTTTCATTCACGATGCCATCAGAAGCTG 48546 Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTAT-CCTTGAGATTGTTCCAT 18634 | |||||||||||||||| || || |||| || | || | |||| ||||| Sbjct 48547 CAAAAAATGCCAAAACATGGGATATAAAGTGTTGCTC-TGATGAATGGAGAGAATTCCAA 48605 Query 18635 TCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAA 18679 || || ||||| ||||| || |||||||| |||||| ||| Sbjct 48606 TCTCGTAAATCTTGGGATAGGTCGACTTCTTCAACTGTCCAGAAA 48650 >seq9 Length=249065 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | || || | ||||| || |||||||| | ||||| ||| || Sbjct 143951 AATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTC 144010 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| |||| |||||| || ||| || ||||| || |||||||| || ||||| || Sbjct 144011 AGATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 144070 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | ||||||| ||| ||||| ||| | |||||| | | ||||| ||||| || || Sbjct 144071 ACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGTACTTTGTCAGACTACAA 144130 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||| |||||| | || ||||| || ||||| Sbjct 144131 TATTCAAAAAGAGTCTACCCTTCACTTGGTGTT 144163 Score = 140 bits (154), Expect = 5e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | ||||| || |||||||| | ||||| ||| || Sbjct 144180 ATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144239 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| |||||| || ||| || ||||| || ||||| || || ||||| ||| Sbjct 144240 GATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 144299 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| ||| ||||| ||| | |||||| | ||||| ||||| |||||| Sbjct 144300 CAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAAT 144359 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| | || ||||| || ||||| Sbjct 144360 ATTCAAAAAGAGTCTACCCTTCACTTGGTGTT 144391 >seq54 Length=107229 Score = 143 bits (158), Expect = 4e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| | || ||||| |||||||| | ||||| ||| ||| Sbjct 11244 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11185 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| ||||| || || ||||||||||||||||| || ||||| || || Sbjct 11184 TGATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCA 11125 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | || || | ||| ||||| || || ||||| | ||| ||||||| ||||| Sbjct 11124 ACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAA 11065 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| |||||| | || ||||| || ||||| | | ||||| ||| Sbjct 11064 TATTCAGAAAGAGTCAACTCTTCACTTGGTGTTGCGTCTGAGAGGAGGT 11016 Score = 138 bits (152), Expect = 2e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| | || ||||| |||||||| | ||||| ||| ||| Sbjct 11472 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11413 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| ||||| || || ||||||||||||||||| || ||||| || || Sbjct 11412 TGATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCA 11353 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | || || | ||| ||||| || || ||||| | ||| ||||||| ||||| Sbjct 11352 ACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAA 11293 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||| |||||| | || ||||| || ||| Sbjct 11292 TATTCAGAAAGAGTCAACTCTTCACTTGGTG 11262 Score = 129 bits (142), Expect = 9e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| | || ||||| |||||||| | ||||| ||| ||| Sbjct 11700 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11641 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| || || || || ||||||||||||||||| || ||||| || || Sbjct 11640 TGATACTATTGAGAATGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCA 11581 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | || || | ||| ||||| || || ||||| | ||| ||||||| ||||| Sbjct 11580 ACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAA 11521 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||| || ||| | || ||||| || ||| Sbjct 11520 TATTCAGAAGGAGTCAACTCTTCACTTGGTG 11490 Score = 129 bits (142), Expect = 9e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| | || ||||| |||||||| | ||||| ||| ||| Sbjct 11928 AATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTC 11869 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| ||||| || || ||||||||||||||||| || ||||| || || Sbjct 11868 TGATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCCGACCA 11809 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | || || | ||| ||||| || || ||||| | ||| |||| || ||||| Sbjct 11808 ACAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCGGACTATAA 11749 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||| || ||| | || ||||| || ||| Sbjct 11748 TATTCAGAAGGAGTCAACTCTTCACTTGGTG 11718 >seq63 Length=104598 Score = 116 bits (128), Expect = 5e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 155841 ACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTG 155900 ||| | ||||| || || ||||| || ||||| || ||| |||| |||| |||||| Sbjct 60555 ACACTTACTGGGAAGACCATTACTTTGGAAGTTGAGCCTTCCGATACTATTGAAAACGTA 60614 Query 155901 AAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCC 155960 || || |||||||| || ||||| || ||||| || |||||| | ||||| | ||| Sbjct 60615 AAGTCCAAGATACAAGACAAGGAAGGTATCCCTCCGGATCAACAACGTTTGATATTTGCA 60674 Query 155961 GGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATAT 156004 || ||||| || |||||| |||||||| || ||||||||||| Sbjct 60675 GGCAAGCAACTAGAAGATGGAAGAACTTTGTCTGATTATAATAT 60718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731868038742800