Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6 168 1e-36 seq26 159 7e-34 seq54 154 3e-32 seq9 131 3e-25 seq63 113 9e-20 >seq6 Length=291449 Score = 168 bits (186), Expect = 1e-36 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 |||||||| ||||| | | || || ||||||||||||| |||||| |||||||||| Sbjct 274551 ATAATACCTCCTCTTAACCTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAA 274492 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| | |||| | | || ||||| || || || ||||| || | |||||||||||| Sbjct 274491 TCAGAAAGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCT 274432 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || || |||||||||||||| || || ||| ||||| || | ||| || | | Sbjct 274431 GGAGGAATACCTTCTTTATCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGT 274372 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| | || |||||||| ||||| || ||||| | |||||| ||||| Sbjct 274371 TCAACTTCCAATGTTATGGTTTTTCCAGTCAACGTTTTCACAAATATTTGCAT 274319 >seq26 Length=183063 Score = 159 bits (176), Expect = 7e-34 Identities = 357/540 (66%), Gaps = 9/540 (2%) Strand=Plus/Plus Query 49814 ATATATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACT 49873 ||||| |||||||||||| ||| ||| ||||| || || | || |||| |||||| Sbjct 77087 ATATAGTAAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGA 77146 Query 49874 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 49933 || || ||||||||||| | |||||||||||| | ||||||||| || |||| || Sbjct 77147 GAAGGTCAATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACC 77206 Query 49934 AGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTT 49993 |||||| ||||| ||||| ||| |||||||| | || | |||| | || || Sbjct 77207 AGAAAAAAATATTCCCTCTACAGCAGCAAATGCCACTAAAC--GCTC--AGCA--AAAGA 77260 Query 49994 ATCATCTAAT---ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATT 50050 || || ||||| ||| |||||| | || ||||| | ||| |||| ||| Sbjct 77261 GGCAGAGGATTGGATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACG 77320 Query 50051 TTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAA 50110 ||| || |||| |||||| | ||||| | || | Sbjct 77321 TTCCATTGCTTCAAATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAG 77380 Query 50111 TAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCT 50170 | |||||| |||| ||||| | | |||||| |||||||||||| |||||| || Sbjct 77381 AAGAGAATAAGTTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCG 77440 Query 50171 TGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACC 50230 |||||||| | ||| || || | | |||| ||| | | ||||| | ||||| || Sbjct 77441 TGCTTCTGGAATCTGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCC 77500 Query 50231 ATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAA 50290 || || | ||| ||||| || || |||| ||| ||||| |||| | || || Sbjct 77501 GTCGGAAGATGCAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAA 77560 Query 50291 ATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGC 50350 || | |||| ||| | || | |||||||||| |||||| |||||||| || || Sbjct 77561 TTTCTTCCAATCTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGAAGC 77620 >seq54 Length=107229 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 |||| ||||| ||||| || || || || | ||| | |||||| |||||||| || | Sbjct 11015 TACCTCCTCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTG 11074 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 ||| || || | || || | ||||||||||||||||||||| | ||||| ||||| | Sbjct 11075 ATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAG 11134 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||||||||||||||| || || || || |||| ||| || | ||||| Sbjct 11135 GAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTA 11194 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||| |||||||| || || || || | ||||| | ||| || |||||| Sbjct 11195 CTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11244 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || | ||| | || || || | ||| | |||||| |||||||| || Sbjct 11242 ATTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCT 11301 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| || || | || || | ||||||||||||||||||||| | ||||| ||||| Sbjct 11302 GATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGA 11361 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||||||||||||||| || || || || |||| ||| || | |||| Sbjct 11362 GGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCT 11421 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| |||||||| || || || || | ||||| | ||| || |||||| Sbjct 11422 ACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11472 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || | ||| | || || || | ||| | ||| || |||||||| || Sbjct 11470 ATTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCT 11529 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| || || | || || | ||||||||||||||||||||| | ||||| ||||| Sbjct 11530 GATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGA 11589 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||||||||||||||| || || ||||| |||| ||| || | |||| Sbjct 11590 GGAATTCCTTCTTTATCTTGTATCTTTGACTTGACATTCTCAATAGTATCAGAAGGTTCT 11649 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| |||||||| || || || || | ||||| | ||| || |||||| Sbjct 11650 ACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11700 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || | ||| | || || || | ||| | ||| || |||||||| || Sbjct 11698 ATTCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCC 11757 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| || || | || || | ||||||||||||||||||||| | ||||| || || Sbjct 11758 GATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGA 11817 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||||||||||||||| || || || || |||| ||| || | |||| Sbjct 11818 GGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCT 11877 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| |||||||| || || || || | ||||| | ||| || |||||| Sbjct 11878 ACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11928 >seq9 Length=249065 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || || | ||| || || || || | |||| |||||| |||||||| || || Sbjct 144634 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGAC 144575 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || |||| ||||| |||||||||||||| || || | ||||| || || || Sbjct 144574 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144515 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || ||||| || || || ||||| |||| |||||| | ||| ||| Sbjct 144514 ATACCTTCCTTGTCTTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAACT 144455 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||| || || ||||| | || || | |||||||||||| Sbjct 144454 TCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATCTGCAT 144408 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || | ||| || || || || | |||| |||||| ||||| || || Sbjct 144181 ATGCCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCT 144122 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| ||||| |||||||||||||| || || | ||||| || || Sbjct 144121 GACAAAGTACGGCCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGG 144062 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| || || || |||| |||||| | ||| Sbjct 144061 GGAATGCCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCA 144002 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| |||||||| || || ||||| | || || | |||||| |||||||| Sbjct 144001 ACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCATTTT 143949 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || | ||| || || || || | |||| |||||| |||||||| || Sbjct 144409 ATGCCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCT 144350 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| ||||| |||||||||||||| || || | ||||| || || Sbjct 144349 GACAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGG 144290 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || ||| || || || |||| |||||| | ||| Sbjct 144289 GGAATACCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCA 144230 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| || || ||||| | || || | |||||| ||||| Sbjct 144229 ACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 144180 >seq63 Length=104598 Score = 113 bits (124), Expect = 9e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 192327 TACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATC 192386 ||| || || ||||| | ||||| ||||||||||||||| || |||| | |||| || Sbjct 60746 TACCAAGTGCAAAGTGGATTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTC 60687 Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 | ||| || || ||||| || || | |||||||| || || || ||||| || ||||| Sbjct 60686 TAGTTGCTTGCCTGCAAATATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTG 60627 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 ||| || ||||| || |||| ||| || | || ||||| | ||||||||| || Sbjct 60626 TATCTTGGACTTTACGTTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTAATGGTCTT 60567 Query 192507 ACCAGTTAATGT 192518 ||||| | ||| Sbjct 60566 CCCAGTAAGTGT 60555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984474538289550