Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq54 163 5e-35 seq6 159 6e-34 seq9 140 6e-28 seq26 123 5e-23 seq63 98.7 2e-15 >seq54 Length=107229 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 |||| ||||| || || || || || || | ||| | |||||| ||||||||| |||| Sbjct 11015 TACCTCCTCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTG 11074 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 ||| || || |||| || | ||||||||||||||| ||||| | ||||||||||| | Sbjct 11075 ATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAG 11134 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | |||||||||||||||||||| || || || || |||||||| || | ||||| Sbjct 11135 GAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTA 11194 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 |||| |||||||| || || || || | ||||| | || || |||||| Sbjct 11195 CTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11244 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || || || | ||| | |||||| ||||||||| ||||||| || || |||| || Sbjct 11263 ACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCA 11322 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | ||||||||||||||| ||||| | ||||||||||| || |||||||||||||||||| Sbjct 11323 AGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGT 11382 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || || || || |||||||| || | ||||||||| |||||||| || || Sbjct 11383 ATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTT 11442 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | ||||| | || || |||||| Sbjct 11443 CCTGTAAGAGTTTTCACAAAGATTTGCATT 11472 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || || || | ||| | ||| || ||||||||| ||||||| || || |||| || Sbjct 11491 ACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCTGATAGAGTACGACCGTCTTCA 11550 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | ||||||||||||||| ||||| | ||||||||||| || |||||||||||||||||| Sbjct 11551 AGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGT 11610 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || || ||||| |||||||| || | ||||||||| |||||||| || || Sbjct 11611 ATCTTTGACTTGACATTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTT 11670 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | ||||| | || || |||||| Sbjct 11671 CCTGTAAGAGTTTTCACAAAGATTTGCATT 11700 Score = 136 bits (150), Expect = 7e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || || || | ||| | ||| || ||||||||| || |||| || || |||| || Sbjct 11719 ACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCCGATAGAGTACGACCGTCTTCA 11778 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | ||||||||||||||| ||||| | |||||||| || || |||||||||||||||||| Sbjct 11779 AGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAGGAATTCCTTCTTTATCTTGT 11838 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || || || || |||||||| || | ||||||||| |||||||| || || Sbjct 11839 ATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATAGTCTTT 11898 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | ||||| | || || |||||| Sbjct 11899 CCTGTAAGAGTTTTCACAAAGATTTGCATT 11928 >seq6 Length=291449 Score = 159 bits (176), Expect = 6e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||||||| ||||| | | || || ||||||||||||| |||||| ||||||||| Sbjct 274551 ATAATACCTCCTCTTAACCTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAA 274492 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || | | || | |||| ||||| || || || |||||||| | ||||||||| || Sbjct 274491 TCAGAAAGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCT 274432 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || |||||||||||||| || || ||| ||||| || ||||| || | | Sbjct 274431 GGAGGAATACCTTCTTTATCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGT 274372 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| | || |||||||| ||||| || ||||| | ||||| ||||| Sbjct 274371 TCAACTTCCAATGTTATGGTTTTTCCAGTCAACGTTTTCACAAATATTTGCAT 274319 >seq9 Length=249065 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 || || || || || | |||| |||||| ||||||||| ||||| |||| || | Sbjct 144622 CGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCA 144563 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| ||||||||||||||||| || | |||||||| || || || ||||| || Sbjct 144562 TCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTG 144503 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || || ||||| ||||||||||| | ||| ||||| |||||||| Sbjct 144502 TCTTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATA 144443 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | || || | ||||||||||| Sbjct 144442 GTCTTCCCAGTGAGAGTCTTCACAAATATCTGCAT 144408 Score = 138 bits (152), Expect = 2e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 || || || || || | |||| |||||| |||||| || ||||| |||| || | Sbjct 144166 CGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGACAAAGTACGGCCA 144107 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| ||||||||||||||||| || | |||||||| || || || ||||| || Sbjct 144106 TCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATGCCTTCCTTG 144047 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || ||| || || || ||||||||||| | ||| ||||| |||||||| Sbjct 144046 TCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATA 143987 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATA 172078 || || ||||| | || || | ||||| |||||||| | ||| Sbjct 143986 GTCTTCCCAGTGAGAGTCTTCACAAATATTTGCATTTTTTAATA 143943 Score = 136 bits (150), Expect = 7e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 || || || || || | |||| |||||| ||||||||| ||||| |||| || | Sbjct 144394 CGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACGACCA 144335 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| ||||||||||||||||| || | |||||||| || || || ||||| || Sbjct 144334 TCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTG 144275 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || ||| || || || ||||||||||| | ||| ||||| |||||||| Sbjct 144274 TCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGTAATA 144215 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | || || | ||||| ||||| Sbjct 144214 GTCTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 144180 >seq26 Length=183063 Score = 123 bits (136), Expect = 5e-23 Identities = 344/538 (64%), Gaps = 5/538 (1%) Strand=Plus/Plus Query 39116 ATATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACT 39175 |||||||||||||||||| || ||| |||||||| || | || |||| |||||| Sbjct 77087 ATATAGTAAACATGCAAAGTCACAATGCAAACCTTCATCACGTGAAATAAGCTCATTAGA 77146 Query 39176 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 39235 || || ||||||||||| | |||||||||||| | ||||||||| || |||| || Sbjct 77147 GAAGGTCAATCCTGGCATAAGTCCTCTCTTTTTCAACCAAAATATGGAACAAAAAGAACC 77206 Query 39236 AGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTA-ATT 39294 |||||| ||||| ||||| ||| |||||||| | || | |||| | || | | Sbjct 77207 AGAAAAAAATATTCCCTCTACAGCAGCAAATGCCACTAAAC--GCTC--AGCAAAAGAGG 77262 Query 39295 TATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTT 39354 | | ||||| ||| ||||| | || ||||| | ||| |||| ||| || Sbjct 77263 CAGAGGATTGGATCCATCTTAAAGCCCACTGAGCCTTTTTCTCAATACAAGGAATACGTT 77322 Query 39355 CTATAGCTTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 39414 | || |||| |||||| | Sbjct 77323 CCATTGCTTCAAATAAACGAGCCTTTTCTTGAGCATCTCGAATATAAGTATCGATAAGAA 77382 Query 39415 NAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTG 39474 |||||| |||| ||||| | | |||||| |||||||||||| |||||| | || Sbjct 77383 GAGAATAAGTTTCCGAATGAATATTTTCCATTGCTATTTGAAATCCATAAAAACATCGTG 77442 Query 39475 CTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCAT 39534 |||||| | ||| || || | | |||| ||| | | ||||| | ||||| || | Sbjct 77443 CTTCTGGAATCTGGACATCACGACAAAATCTTTCTGCAAGGTTCTCCAAAACAATTCCGT 77502 Query 39535 CAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAAT 39594 | || | ||| ||||| || || || | ||| ||||| |||| | || || | Sbjct 77503 CGGAAGATGCAAAGAAAGCCAATACGTGAGAAATGAAATGGCGCTCATCTGCATTCAATT 77562 Query 39595 TTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGC 39652 | | |||| ||| | || | |||||||||| |||||| ||||||||||| || Sbjct 77563 TCTTCCAATCTTCCAAGTCACTCGATAAATCTATTTCTTCAGCAGTCCAAAAAGAAGC 77620 >seq63 Length=104598 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 171860 TACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATC 171919 ||| || || ||||| | ||||| ||||||||||| || |||| || | | || || Sbjct 60746 TACCAAGTGCAAAGTGGATTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTC 60687 Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 | ||| || || ||||| || || | ||||| || || || || ||||| || ||||| Sbjct 60686 TAGTTGCTTGCCTGCAAATATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTG 60627 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 ||| || ||||| || |||||||| || | || ||||| | ||||||||| || Sbjct 60626 TATCTTGGACTTTACGTTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTAATGGTCTT 60567 Query 172040 ACCAGTTAATGT 172051 ||||| | ||| Sbjct 60566 CCCAGTAAGTGT 60555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905131100951400