Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq19 219 1e-51 seq6 196 1e-44 seq36 174 5e-38 seq8 141 3e-28 seq26 107 6e-18 seq42 95.1 4e-14 seq63 93.3 1e-13 seq48 93.3 1e-13 >seq19 Length=190679 Score = 219 bits (242), Expect = 1e-51 Identities = 379/542 (70%), Gaps = 14/542 (3%) Strand=Plus/Minus Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038 || |||||||| | | ||||| ||||| |||||| | ||| ||||||| ||| Sbjct 26191 CCATGATTCTTTCTCAAATCTAAAAATTCAAAAATATCGGCATGCCAAGGCTCCAAATAA 26132 Query 156039 ATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTG 156095 ||||||||| || || || || || || ||||| ||||| | ||||| | ||| Sbjct 26131 ATAGCAAAAGCTCCTTTTCTTTTTCCTCCTCCTTGATCCACATATCTTGCAGTATCATTA 26072 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA 156155 || || | |||||||||| ||| ||||| ||||| |||||||| || ||||||| || Sbjct 26071 AATACTCGAAGCATAGGAACAATGCCATTAGAAGTTCCATTGGTACCTCGAATATAAGAT 26012 Query 156156 CCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGA 156215 | || || | || ||||| | |||||||||||| | | ||||||||| Sbjct 26011 TTGGTTGCACGTATATCATGAACTGCCAATCCAATACCACCAGCACTTTTAGAAATAACT 25952 Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275 || ||| |||| ||||| |||| |||||||| || || || ||| | || ||| Sbjct 25951 GCACATCTTTTTAAAGTATCATAAATTCCTTCAATGGAGTCTTCAGTCATAGTTAATAGG 25892 Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 | || || ||| ||||||| ||| || || || ||||||| ||||||| |||||| Sbjct 25891 AAACAAGAGGATAACTGAGGTCTTGGAGTACCCGCATTGAATAAAGTAGGTGAAGCATGA 25832 Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTCC-TTAAT-CTTCTCAAGATTAGACC 156393 |||| || || |||||||||||| || |||||| || | |||| |||| | | | Sbjct 25831 GTAAAGTATTTTCGAGACATATAATCATAAGTCTCCAATACTGCTTC-CAAG-TCATCCT 25774 Query 156394 CGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACT---C 156450 |||||||| | || || |||||| ||||||| || || || ||| |||||| | Sbjct 25773 TGTGAATACCAACAGCTACTCTCATCAACATATGTTGTGGTCGTTCT---ATCACTTTGC 25717 Query 156451 CATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAA 156510 |||| | || | | || | ||||| | |||||| || || || |||||| | |||| Sbjct 25716 CATCCACACGTAATAAATAGGAACGTTCTAAAGTTTTGAATCCAAAGTAATCATA-AGAA 25658 Query 156511 AA 156512 || Sbjct 25657 AA 25656 >seq6 Length=291449 Score = 196 bits (216), Expect = 1e-44 Identities = 354/507 (70%), Gaps = 18/507 (4%) Strand=Plus/Plus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 ||||||||| |||| ||| |||||| ||||||||| ||||| | || |||||||| Sbjct 226957 ATCAAACCTTCCAGGACGTAATAATGCACGGTCTAATACATCGGAACGATTAGTTGCTGC 227016 Query 288912 CAATACAACAATAG-ATTCGGTTTGCTTA-AATCCATCCATACTTGTTAAAATTTGATTA 288969 | |||| ||| ||| |||||||| || || ||||| ||| | | ||| || Sbjct 227017 AATAACAATGATACCATT--GTTTGCTTCGAAACCGTCCATTTCTGTAAGCAATTGGTTG 227074 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt--t 289027 || |||||||| |||||||||||| || | | | ||| |||||| ||| Sbjct 227075 AGAGTTTGTTCTCTTTCATCATTT---CCGCCCGCAATACC-----GGCTCCTCTTTGCC 227126 Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||| || ||||| ||||| ||||| ||||| | ||| |||| ||| | | | || || Sbjct 227127 TACCTACTGCATCTATTTCATCAATAAAAATAATACAAGGAGCATTCTTTTTGGCTTGTG 227186 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 ||||||| || | ||||| || |||| ||||||| |||| || ||||| || ||| Sbjct 227187 CAAATAAATCACGAACACGACTAGCGCCAACACCAACAAACATCTCAACAAACTCTGAAC 227246 Query 289148 CGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | | | | || | || | ||| |||||| || ||||| || || || || ||||| Sbjct 227247 CTG-CAATAGACAAAAAGGGTACTCCTGCTTCTCCAGCTACAGCTCTTGCAAGTAGTGTT 227305 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGA 289265 || |||||||| ||||||||||| | | |||||| |||| | ||||| || ||| | Sbjct 227306 TTTCCTGTTCCTGGTGGTCCCTCAAGAATAACTCCTCTTGGAATCTTTGCTCCTAGCTG- 227364 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | || | || | ||| | |||| |||| || |||||||| |||||| | Sbjct 227365 CGTAAAACGATCTGAATCCTTCAGAAATGAAACAACCTCTTCAAGTTCCACTTTTGCTCC 227424 Query 289326 ATCACATCCTGCTACATCAGCAAAAGT 289352 |||||| ||||| ||||| |||||| Sbjct 227425 ATCACAACCTGCAACATCGTTAAAAGT 227451 >seq36 Length=158315 Score = 174 bits (192), Expect = 5e-38 Identities = 330/480 (69%), Gaps = 22/480 (5%) Strand=Plus/Plus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGC---TTA 288939 ||||||| ||| ||| || ||||| || ||||||||| | || | | | | Sbjct 64742 TCTAATACATCAATTCTATTAGTTGCGGC---TACAACAATTATACCTGTATTCCCCTCA 64798 Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 ||||| ||||| ||||| | ||||||||| |||||||| |||||||||||| ||| Sbjct 64799 AATCCGTCCATTTCTGTTAGTAGTTGATTAAGAGTTTGTTCTCTTTCATCATTT---CCT 64855 Query 289000 CTTGAATCACCCGAATCGCT-CCttttttt--ACCAACAGCATCAATTTCGTCAATGAAA 289056 | |||| | | | ||| ||| | ||| |||||||||||||| || || || Sbjct 64856 C------CACCGATACCTGTACCTCTTTGTCGACCGACAGCATCAATTTCATCTATAAAT 64909 Query 289057 ATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCA 289116 | | ||| || | ||||| | | || || ||| | |||||||| | |||||||| Sbjct 64910 ACAATACAAGGTGCATTTTCTTTAGCTTTTTTAAAAAGATCTCTTACTCTAGATGCTCCC 64969 Query 289117 AGACCAACATACATTTCTACAAATTCAGAAGCGG--ATACTTGAATGAATGTTACATTTG 289174 | || ||| ||||||| ||||||||||| | | ||||| || |||| |||| || Sbjct 64970 ACTCCTACAAACATTTCGACAAATTCAGATCCAGAAATACT--AAAAAATGGTACACCTG 65027 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 |||| || || | || | || | ||| || |||||||| || |||| || | | || Sbjct 65028 CTTCACCGGCAATAGCTTTAGCTAAAAGAGTTTTACCTGTCCCTGGTGCACCAACAAGTA 65087 Query 289235 GAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATT 289294 ||||| ||||| | | | || ||| || || || | || || | |||||||| Sbjct 65088 ATACTCCTTTTGGAATTCTAGCACCAATAGCAGTAAATCTTTCTGGCTTTTTTAAAAAAG 65147 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 ||||||||||| || || | || || || ||| |||||| | |||| ||||||||| Sbjct 65148 TTACAATTTCCTGAAACTCTTCCTTAGCTTCTTCAATTCCTGCAATATCATCAAAAGTAA 65207 >seq8 Length=268242 Score = 141 bits (156), Expect = 3e-28 Identities = 279/410 (68%), Gaps = 16/410 (4%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || || | ||||| || |||||||| ||||||||||| || Sbjct 226443 AAACCCATCCATTTCCGTCAATAACTGATTCAGAGTTTGTTCTCTTTCATCATTC---CC 226499 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || | | | || | | | | || | |||| || || || ||||| ||||| ||||| Sbjct 226500 TCCAGCAACTCCTGCACCTCG---TTGTCTACCTACCGCGTCTATTTCATCAATAAAAAT 226556 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | |||||||| ||| | | | || |||||||| || | ||||| || |||| Sbjct 226557 AATACACGGAGCATTCTTTTTGGCTTGCGCAAATAAGTCACGAACACGACTAGCACCAAC 226616 Query 289119 ACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTC 289178 |||||| |||||||||||||||| ||| | | | || ||| | || ||||| Sbjct 226617 TCCAACAAACATTTCTACAAATTCTGAACCTGCAATAGAAAAGAAAGCAACTCCAGCTTC 226676 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 ||||| ||||| || |||| | ||||| || |||||||| || ||||| || | || Sbjct 226677 ACCTGCAACTGCTCTGGCCAACAAAGTCTTTCCAGTTCCAGGAGGACCCTCCAAAATGAC 226736 Query 289239 TCCCTTTGGTACTTTTGCCCCAGC-----AGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 || | || |||||||| ||| | ||| |||||||| || | | |||| Sbjct 226737 GCCTCTAGGCACTTTTGCACCAACTTGTGAGA---ATATTTCT--GGATTGCGAACAAAT 226791 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 || || | ||| | |||||| |||| | |||| | ||||||||||| Sbjct 226792 TCAACTACTTCTTGAAGTTCTACTTTTACACTATCATAACCTGCTACATC 226841 >seq26 Length=183063 Score = 107 bits (118), Expect = 6e-18 Identities = 220/321 (69%), Gaps = 11/321 (3%) Strand=Plus/Minus Query 133319 TTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATT 133378 |||||||| | || || || ||||||||||| ||||| || |||||| ||| || Sbjct 77434 TTTTATGGATTTCAAATAGCAATGGAAAATATTCATTCGGAAACTTATTCTCTTCTTATC 77375 Query 133379 GATACTTACATCAAAGATACCGTCCAGAA---GCACAAACTATTCAACGCCAT-TAGCGA 133434 |||||||| || |||| | || |||| || | |||| | || || | || Sbjct 77374 GATACTTATATTCGAGATGC--TCAAGAAAAGGCTC-GTTTATTTGAAGCAATGGAACGT 77318 Query 133435 ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGC 133494 | ||||||||||| | || || || | |||||| | | ||||||||| | ||| Sbjct 77317 A-TTCCTTGTATTGAGAAAAAGGCTCAGTGGGCTTTAAGATGGATCCAATCC---TCTGC 77262 Query 133495 GAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGC 133554 ||||||| ||| | || || ||||||| |||||||| || ||||| |||| | Sbjct 77261 CTCTTTTGCTGAGCGTTTAGTGGCATTTGCTGCTGTAGAGGGAATATTTTTTTCTGGTTC 77202 Query 133555 GTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAA 133614 || || || || |||||| | |||||| | || || | || ||| || || ||||| Sbjct 77201 TTTTTGTTCCATATTTTGGTTGAAAAAGAGAGGACTTATGCCAGGATTGACCTTCTCTAA 77142 Query 133615 CGAACTTATTTCAAGGGACGA 133635 || ||||||||| | || || Sbjct 77141 TGAGCTTATTTCACGTGATGA 77121 >seq42 Length=169963 Score = 95.1 bits (104), Expect = 4e-14 Identities = 164/235 (70%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATG----AATGTTACATTTGC 289175 || ||| |||||||| ||||||| ||| | ||||| || || | |||| ||| Sbjct 53327 CCGACAAACATTTCTTCAAATTCCGAACC----ACTTGCATAGAAAAAGGGTACACCTGC 53382 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 || || |||| || | |||| ||||| |||||||||||||||||||| | |||| Sbjct 53383 CTCTCCAGCTATGGCACGAGCCAAGAGTGTTTTACCTGTTCCAGGTGGTCCAACCAATAA 53442 Query 289236 AACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATT 289294 || || ||||||| |||| | |||| | || | | | || ||||| |||| | | Sbjct 53443 GACACCTTTTGGTAGTTTTCCTCCCAACCGAGTAAAAGTT-TCAGGAGAACGTAAATAAT 53501 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 |||||||| || ||||| ||||| || ||||| ||| ||| || |||| Sbjct 53502 GAACAATTTCTTCTAGTTCTGCCTTTGCTTCGTCACACCCTTTTACGTCTTCAAA 53556 >seq63 Length=104598 Score = 93.3 bits (102), Expect = 1e-13 Identities = 313/480 (65%), Gaps = 23/480 (5%) Strand=Plus/Plus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAAT 288942 ||||| ||||| |||| || ||| | || |||||||||| | | || |||| Sbjct 58274 TCTAAGATATCCGCTCGATTGGTTCCAGCAAATACAACAACACCTGTGGAAGATGTAAAA 58333 Query 288943 CCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTT 289002 |||||||| | ||| | ||| ||||| | ||| |||||||||||| |||| Sbjct 58334 CCATCCATTTCTACTAATAAAGCATTGAGTGTATTTTCTCTTTCATCATTT---CCTCCA 58390 Query 289003 GAAT---CACC-CGAA-TCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | | |||| ||| ||| | | |||||||| |||||||| ||||| || | Sbjct 58391 GCAAAGCCACCTCGACCTCGAGCACGT-----CCAACAGCGTCAATTTCATCAATAAACA 58445 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | ||| || | ||| ||| || |||||| | || ||||| || || |||| Sbjct 58446 CAATACAAGGTGCATTGGCTCTAGCTTGTGCAAAGAGATCCCTTACTCGACTTGGACCAA 58505 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTG----AATGAATGTTACATTT 289173 ||| ||| ||||||| | ||| || ||| | ||||| || ||| | ||| | Sbjct 58506 CACCCACAAACATTTCAATAAAATCCGAACC----ACTTGTCGAAAAGAAGGGAACACTA 58561 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 || || ||||| ||| | || || | ||||| ||||||||||| || || | || Sbjct 58562 GCCTCTCCTGCAGTAGCCTTTGCGAGTAAAGTCTTTCCTGTTCCAGGAGGACCAACCAAC 58621 Query 289234 AGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 | | || || || | ||| || || | || ||||||||| || | |||||||| Sbjct 58622 AAGGCACCTTTCGGGAGTTTGGCTCCTAATCTAC-GATATTTCTCGGGCTTTTTTAAAAA 58680 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || |||| |||| | ||| ||| || || || | || || |||||| ||| || Sbjct 58681 ATCAACAAATTCCATGATTTCTACTTTAGCTTCGTCCAACCCAGCAACATCATTAAAGGT 58740 >seq48 Length=131600 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 || || |||| |||||||||||| | ||||||||| |||| ||| || ||||| || | Sbjct 86037 GCTCCATGAGAAATCATACAATCTCTTTCCATTTCTCCAAAACGGAGTCCACCTTCTCTA 85978 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTT--GGACCCTGAGCACGATAAT 233390 | || || | ||||| ||| | || || | || ||||| ||||||| ||| Sbjct 85977 GCTCTTCCTTCGACTGGTTGTCTCGT--AAGTATTTGAACAGGACCACGAGCACGTGAAT 85920 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATA 233447 |||||||| | |||||||||||| |||| |||||| ||||||||||||| Sbjct 85919 GTATTTTATCGTCAACCATATGCTTGAGTCGTTGGTAATAAGTAGGACCAATAAATA 85863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471809434631921