Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq36 515 4e-141 >seq36 Length=158315 Score = 515 bits (570), Expect = 4e-141 Identities = 736/1031 (71%), Gaps = 4/1031 (0%) Strand=Plus/Plus Query 152349 AAGGGGGTGGTTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGG 152408 ||| |||||||| || | | ||||| ||||| || | || || || || ||| |||| Sbjct 39767 AAGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGG 39826 Query 152409 TTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGG 152468 ||||| || | || |||||||| | | ||||| ||| | || | ||| |||| || Sbjct 39827 ATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGG 39886 Query 152469 GACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGC 152528 || ||||| | || ||||||||| || || || || ||| ||| | || || Sbjct 39887 TACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATG 39946 Query 152529 AAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCT 152588 || ||| | || || ||||| || | ||| ||| || |||||| || || | | | Sbjct 39947 TAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCATTATTATT 40006 Query 152589 TCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTG 152648 | | ||||| || || |||||||| ||||| |||||| ||| | ||||| || || Sbjct 40007 TTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTTG 40066 Query 152649 GGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTT-CGCCAGTTTG 152707 | ||||| || | || || ||||| || | || ||||| || || || || |||| Sbjct 40067 GACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTT-TGTTTGCGTCAATTTG 40125 Query 152708 AACTGGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCG 152767 || | || | | |||| || | || |||||||| || || || || || || || | Sbjct 40126 AAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATTG 40185 Query 152768 CTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTC 152827 | ||||||||| || ||||| || || || || || ||| | ||||||||||| |||| Sbjct 40186 CAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCTC 40245 Query 152828 CATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACT 152887 | ||| || || ||||| ||||| ||||| || | || | ||||| ||||| || | Sbjct 40246 CTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAATT 40305 Query 152888 GGACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTT 152947 |||| || ||||| |||||||||||||||||||| || || | ||||| || || |||| Sbjct 40306 GGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTTT 40365 Query 152948 CTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACA 153007 ||| |||||||| | || ||||||||||| || | ||||||| ||| || || | Sbjct 40366 GTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTAATA 40425 Query 153008 CTTTCAAAGCTTTCGACAGC-ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAAC 153066 |||||| ||||| ||| | || ||| ||| || || ||||| |||||||| ||||| Sbjct 40426 CTTTCAGGGCTTT-TACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTAAT 40484 Query 153067 CGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTT 153126 ||||| ||||| || || ||||| |||| ||| || ||| | ||||| ||||| ||| Sbjct 40485 CGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTTTT 40544 Query 153127 ATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCT 153186 ||||| ||||| || |||| || | ||||| |||||||| ||||| || ||||| Sbjct 40545 ATGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTTGCA 40604 Query 153187 CTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAA 153246 | ||| | ||||| || |||||||| ||||||||| | | || |||| || || ||| Sbjct 40605 TTAAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCCAGAA 40664 Query 153247 TTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCA 153306 |||||||| || ||||| || ||| | ||| | || |||||| | | || ||| ||||| Sbjct 40665 TTTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATGGCA 40724 Query 153307 CCTGTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAAC 153366 | || ||||| ||||| || || || ||||| || ||||| || ||||| || || Sbjct 40725 ACACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAAT 40784 Query 153367 GCTCTGTGATA 153377 || || | ||| Sbjct 40785 GCCCTTTAATA 40795 Score = 450 bits (498), Expect = 2e-121 Identities = 672/951 (71%), Gaps = 2/951 (0%) Strand=Plus/Minus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 || ||||| || | |||||||| || || | ||||| || || | | |||| || Sbjct 27738 AATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACAGCTAC- 27680 Query 150926 ATTTGC-TTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 150984 || || || || | | ||| || |||||||| || || || || || || || | || Sbjct 27679 ATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGA 27620 Query 150985 ACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTC 151044 ||| ||| | || || || | || || || || || || |||||||| |||| ||| | Sbjct 27619 ACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGTACCTAC 27560 Query 151045 TTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATG 151104 ||||| || || || | || |||||||| || ||||||||||| ||| | |||||||| Sbjct 27559 ATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATG 27500 Query 151105 GCTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGC 151164 ||| || || || ||||||| || | | || || |||||| | ||||| || | ||| Sbjct 27499 GCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGC 27440 Query 151165 TTACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCGT 151224 || ||||| ||||| |||||| | || || | || |||||||| ||||| ||| Sbjct 27439 ATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGT 27380 Query 151225 TGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCA 151284 || | ||| ||||| |||||||| || | || || || | |||||||| | || || Sbjct 27379 AGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTATTGGACA 27320 Query 151285 AGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGT 151344 |||| ||| || |||| ||||| | ||||||||||| || || || | ||| | || Sbjct 27319 AGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGT 27260 Query 151345 CTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGT 151404 |||||||| || || || ||| | ||||| || || |||||| | ||||| |||||||| Sbjct 27259 TTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGT 27200 Query 151405 CTTCGGTGGATCGCTCTTCTCGGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCG 151464 || || || || | || ||||||||||| ||||| || ||||| || | || Sbjct 27199 ATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACG 27140 Query 151465 TGAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 151524 ||| || || || || ||||| ||| ||||||| || || || |||||| | || || Sbjct 27139 TGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATATGAAAC 27080 Query 151525 CTACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTT 151584 || ||||||||||| || || ||||| ||||| | | || |||||||| || ||| Sbjct 27079 TTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTT 27020 Query 151585 CAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 151644 || ||||| || || | || |||||| | || |||||| || || |||| ||| | Sbjct 27019 TAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCT 26960 Query 151645 CACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 151704 ||| | | ||| ||||||| |||||||| ||| | || || || || || || || || Sbjct 26959 CACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAATCAATC 26900 Query 151705 CATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGG 151764 | | ||| ||| || | ||| | || || ||||| || || | || |||||| Sbjct 26899 TGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCGTGCAAA 26840 Query 151765 TCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGA 151815 | | || || ||||| ||||| || |||||||| || ||||| ||||| || Sbjct 26839 TTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGA 26789 Score = 129 bits (142), Expect = 6e-25 Identities = 165/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 151995 GATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGT 152054 ||||| || || || || ||||| ||||| ||||||||| | ||| | ||| |||||| Sbjct 69671 GATGATCAATATATATTAGATGCAGCTGAAGAACAAGGATTAGATCTACCCTATTCTTGT 69730 Query 152055 CGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACA-GTTGATCAGAG 152113 | || || |||||||| ||||||| ||||| | ||| || | ||| || ||||| Sbjct 69731 AGAGCAGGAGCATGTTCTACTTGTGCAGGTAA-ACTGTTAGAAGGACAAGTAGATCAATC 69789 Query 152114 TGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGC 152173 ||| || ||||| | |||||||| ||| | || ||||||| || || || |||||||| Sbjct 69790 TGATCAGTCATTTCTAGATGATGATCAGGTAAAAGCAGGATTTGTCCTAACATGTGTTGC 69849 Query 152174 ATATCCAACTTCTGATGTCACCCTCATGACTGAACAAGAGGAGTC 152218 |||||| |||| | ||| || | | ||| | ||||| || || Sbjct 69850 ATATCCTACTTGTAATGCAACAATTTTAACTCATCAAGAAGAATC 69894 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 148131 CGGGGTGTAGCTTAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAA 148190 |||| |||||| ||||||||||| ||| | ||||||||||| | | |||||||||||||| Sbjct 145216 CGGGATGTAGCGTAGCTTGGTAGCGCGTCTGCTTTGGGAGCAGAATGTCGCAGGTTCAAA 145157 Query 148191 TCCTGCCACCCCGAT 148205 |||||||| |||||| Sbjct 145156 TCCTGCCATCCCGAT 145142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549619425168760