Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq36 598 5e-166 >seq36 Length=158315 Score = 598 bits (662), Expect = 5e-166 Identities = 727/991 (73%), Gaps = 0/991 (0%) Strand=Plus/Minus Query 72255 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAAC 72314 ||| || ||||| ||||| | ||||||||||| || ||||||||||| | ||||| Sbjct 27745 CACAGAAAATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAAC 27686 Query 72315 TGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAAT 72374 ||| | || || || | | ||| || |||||||| ||||| ||||| ||||| || Sbjct 27685 AGCTACATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTAT 27626 Query 72375 CAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGT 72434 |||||||||||| | || || || |||||||| || || || || |||||||| | || Sbjct 27625 TAGAGAACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGT 27566 Query 72435 TCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGA 72494 || | || || ||||||||| |||| |||||||| || ||||||||||| || | || Sbjct 27565 ACCTACATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGA 27506 Query 72495 CGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAAT 72554 || ||| | ||||| || |||||||| | ||| | |||| |||||| |||||||||| Sbjct 27505 TGAATGGCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAAT 27446 Query 72555 CTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGAT 72614 | ||| || ||||| | | |||||| || || | || |||||| | |||||||| Sbjct 27445 TTGTGCATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGAT 27386 Query 72615 ATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATT 72674 | ||||| | |||||| ||||| ||||||| || ||||| || | ||||| | Sbjct 27385 AGCCGTAGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTAT 27326 Query 72675 CGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCAT 72734 || || ||| || || |||||||||||| ||||||| || ||||| || || || || Sbjct 27325 TGGACAAGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTAT 27266 Query 72735 GTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGC 72794 ||| || |||||||| ||||| || || ||||||| || || |||||| ||||| || Sbjct 27265 GTTAGTTTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGC 27206 Query 72795 AGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCT 72854 ||| | || || ||| | || |||||||||||||| || ||||| |||||| | | Sbjct 27205 TGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTCAAGTTT 27146 Query 72855 AATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGA 72914 || | || ||||||||||| ||| | |||| | || ||||| || || |||||| | Sbjct 27145 GATACGTGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATA 27086 Query 72915 AGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGC 72974 ||||| |||||||| |||||||||||||| || || || |||||||| ||||| ||||| Sbjct 27085 TGAAACTTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGC 27026 Query 72975 ATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGT 73034 | || || || || || |||||||| |||||| | ||| ||| || ||||| ||| | Sbjct 27025 AAGCTTTAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTAT 26966 Query 73035 ATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAA 73094 ||| | || || | |||||| | ||||||||||| ||| | || ||||| || || || Sbjct 26965 TTGGCTCACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAA 26906 Query 73095 CCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAG 73154 ||||| ||||| ||| | | |||| | | || |||| ||| || | || | Sbjct 26905 TCAATCTGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCG 26846 Query 73155 AGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCT 73214 ||||| | ||||| ||||| ||||||||| | |||||||| ||||| || ||||| | Sbjct 26845 TGCAAATTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGATTT 26786 Query 73215 AGCATCTGCTGAGTCTACAACAGTTGCATTA 73245 |||| || | ||| | ||||||| ||| Sbjct 26785 AGCAAGTGAAGTATCTTTACCAGTTGCTTTA 26755 Score = 529 bits (586), Expect = 2e-145 Identities = 750/1051 (71%), Gaps = 25/1051 (2%) Strand=Plus/Plus Query 73353 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 73412 |||||| ||||| ||| | ||||||||||| |||| | ||||| || || || || | Sbjct 39766 AAAGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTG 39825 Query 73413 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 73472 ||||||| ||| | ||||||| || ||| | || ||||| | || | ||||| || Sbjct 39826 GATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAG 39885 Query 73473 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 73532 | || ||||| || || || ||||| || |||||| | || || || ||| | || ||| Sbjct 39886 GTACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGAT 39945 Query 73533 CAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 73592 ||||||||||| || |||||||||| |||| || |||||| || |||| | Sbjct 39946 GTAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCATTATTAT 40005 Query 73593 TCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 73652 | | ||||||||||| || ||||| ||| || |||||| |||| | || || || | Sbjct 40006 TTTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTT 40065 Query 73653 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTT-AGACAGTTT 73711 ||| ||| || |||||||| | |||| | |||||||| || || | || ||| Sbjct 40066 GGACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTT-TTGTTTGCGTCAATTT 40124 Query 73712 GAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATC 73771 || || || || | || || || | || ||||| ||| |||||||||||| | || Sbjct 40125 GAAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATT 40184 Query 73772 GCAGTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCA 73831 ||||| || | ||||| || ||||| | || || ||||||||| || || Sbjct 40185 GCAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCT 40244 Query 73832 CCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAAT 73891 ||| || || || ||||| |||||||| | ||||||||| |||| |||||||| ||| Sbjct 40245 CCTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAAT 40304 Query 73892 ATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTA 73951 ||| | ||||||||||||||||||||||| || || ||||| || ||||||||||| Sbjct 40305 TGGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTT 40364 Query 73952 TGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACT 74011 ||||| || ||||| || || ||| |||| ||||| | |||| || | Sbjct 40365 TGTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAG----ATGGC-------- 40412 Query 74012 GAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACT 74071 |||| | ||| |||||||| || || || ||||| ||| || ||| Sbjct 40413 GAAGCT---------GCTAATACTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACT 40463 Query 74072 TATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAAC 74131 ||| ||| |||| ||||| | || |||||||| || |||||| | |||||||| ||| Sbjct 40464 TATTCAATGGTTACGGCTAATCGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAAC 40523 Query 74132 AAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCT 74191 ||||||| |||| || ||||| | || || || || | || | |||||| ||| Sbjct 40524 AAAAGATGGCTACATTTTTTTATGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCT 40583 Query 74192 ATAGGTATCGTAGGTCTAGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGAT 74250 || |||||| |||| || ||| |||| ||| | ||||| || ||||| |||||||| | Sbjct 40584 ATTGGTATCATAGGACTTGCA-TTAAATTTACGTGCATATGATTTTGTCTCTCAAGAATT 40642 Query 74251 AAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGA 74310 | | || ||||| |||||||| ||||| || || || ||||| || | ||||| ||||| Sbjct 40643 ACGTGCCGCAGAGGACCCAGAATTTGAGACTTTTTATACTAAAAATTTACTTCTAAATGA 40702 Query 74311 AGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGA 74370 |||||| |||||||||||| || | |||||||| ||||| || ||||| |||||||| Sbjct 40703 AGGTATAAGAGCATGGATGGCAACACAAGATCAACCACATGAAAATTTTGTATTCCCAGA 40762 Query 74371 AGAAGTCTTGCCACGAGGCAACGCACTATAA 74401 || || || ||||| || || || || ||| Sbjct 40763 GGAGGTTTTACCACGTGGAAATGCCCTTTAA 40793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572870499321640