Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq9 158 1e-33 seq54 152 5e-32 seq63 116 3e-21 seq19 109 5e-19 >seq9 Length=249065 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || |||||||| || ||||| ||| || | Sbjct 144408 ATGCAGATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144467 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||| |||||||| ||||| || || || || ||| Sbjct 144468 GATACTATTGAAAATGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 144527 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || |||||| |||| ||| | | ||||||| ||||| Sbjct 144528 CAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAAT 144587 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| || || || || |||||||||||||| ||| | ||||| Sbjct 144588 ATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGG 144634 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || || || || |||||||| || ||||| ||| || | Sbjct 144180 ATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144239 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||| |||||||| ||||| || || || || ||| Sbjct 144240 GATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 144299 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || |||||| |||| ||| | | ||||||| ||||| Sbjct 144300 CAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAAT 144359 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| || || || || |||||||||||||| ||| | |||||| Sbjct 144360 ATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGGC 144407 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || || || || |||||||| || ||||| ||| || | Sbjct 143952 ATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144011 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || ||||| |||||||| ||||| || || || || ||| Sbjct 144012 GATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 144071 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || |||||| |||| ||| | | ||||||| || || Sbjct 144072 CAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGTACTTTGTCAGACTACAAT 144131 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| || || || || |||||||||||||| ||| | |||||| Sbjct 144132 ATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGGC 144179 >seq54 Length=107229 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || || || || |||||||| || ||||||||| | | Sbjct 11699 ATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCT 11640 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||| ||||| ||||||||||| ||||| || ||| Sbjct 11639 GATACTATTGAGAATGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCAA 11580 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| |||||||| || ||||| || || || | | | ||||| ||||| Sbjct 11579 CAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAAT 11520 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || ||||||||| |||| ||| | ||||| Sbjct 11519 ATTCAGAAGGAGTCAACTCTTCACTTGGTGCTGCGTTTGAGGGGAGG 11473 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || || || || |||||||| || ||||||||| | | Sbjct 11927 ATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCT 11868 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||| ||||| ||||||||||| |||||||| ||| Sbjct 11867 GATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCCGACCAA 11808 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| |||||||| || ||||| || || || | | | || || ||||| Sbjct 11807 CAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCGGACTATAAT 11748 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || ||||||||| |||| ||| | ||||| Sbjct 11747 ATTCAGAAGGAGTCAACTCTTCACTTGGTGCTGCGTTTGAGGGGAGG 11701 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || || || || |||||||| || ||||||||| | | Sbjct 11243 ATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCT 11184 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||| ||||| ||||||||||| ||||| || ||| Sbjct 11183 GATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCAA 11124 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| |||||||| || ||||| || || || | | | ||||| ||||| Sbjct 11123 CAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAAT 11064 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || || || || || |||||||||||||| || | ||||| Sbjct 11063 ATTCAGAAAGAGTCAACTCTTCACTTGGTGTTGCGTCTGAGAGGAGG 11017 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || || || || |||||||| || ||||||||| | | Sbjct 11471 ATGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCT 11412 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||| ||||| ||||||||||| ||||| || ||| Sbjct 11411 GATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCAA 11352 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||| |||||||| || ||||| || || || | | | ||||| ||||| Sbjct 11351 CAACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAAT 11292 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || || || || || ||||||||| |||| ||| | ||||| Sbjct 11291 ATTCAGAAAGAGTCAACTCTTCACTTGGTGCTGCGTTTGAGGGGAGG 11245 >seq63 Length=104598 Score = 116 bits (128), Expect = 3e-21 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 || || |||||| || | | || || || || || ||||| | ||||| || | || Sbjct 60538 ATACACATCTTTTCTAGA-CACTTACTGGGAAGACCATTACTTTGGAAGTTGAGCCTTCC 60596 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| ||||| ||||| |||||||| ||||| || ||||| |||||| Sbjct 60597 GATACTATTGAAAACGTAAAGTCCAAGATACAAGACAAGGAAGGTATCCCTCCGGATCAA 60656 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| ||||| || || || || || ||| |||| |||| |||||||| Sbjct 60657 CAACGTTTGATATTTGCAGGCAAGCAACTAGAAGATGGAAGAACTTTGTCTGATTATAAT 60716 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || ||||| || | |||||||| Sbjct 60717 ATCCAGAAAGAATCCACTTTGCACTTGGT 60745 >seq19 Length=190679 Score = 109 bits (120), Expect = 5e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 |||| |||||||| | ||||||||||||||| || || || || |||||||||||| Sbjct 26592 TATTGTACAATTTCAGTACACAAATTACTACATCGAATAGTTCCCAAGTTTTGTTGATTG 26533 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242 ||||| | || ||| |||||||||||||||||| || | |||||||| | ||||| Sbjct 26532 CTTTTCCTATTGCAATGATCTTTGTAAAGCATATATGGATTTCCAGTTTCTATTTGTGCT 26473 Query 139243 TCTATAAT 139250 |||| ||| Sbjct 26472 TCTAAAAT 26465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895164929240