Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq9 109 5e-19 seq6 105 6e-18 >seq9 Length=249065 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||||||||| || ||| | || || || || ||||| | ||| || || Sbjct 143949 AAAATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCC 144008 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| | | | || || |||||| ||||| |||||| | ||| || Sbjct 144009 TCAGATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGAC 144068 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | |||| ||| ||||||||| |||| |||| | | || || | || ||| Sbjct 144069 CAACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGTACTTTGTCAGACTAC 144128 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || ||||||||||| ||||| | ||| ||||||| Sbjct 144129 AATATTCAAAAAGAGTCTACCCTTCACTTGGTGTT 144163 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| || ||| | || || || || ||||| | ||| || || Sbjct 144180 ATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144239 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || || |||||| ||||| ||||| | ||| || ||| Sbjct 144240 GATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 144299 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| ||| ||||||||| |||| |||| | || || | || || || Sbjct 144300 CAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAAT 144359 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||||||||| ||||| | ||| ||||||| Sbjct 144360 ATTCAAAAAGAGTCTACCCTTCACTTGGTGTT 144391 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| |||||||| || ||| | || || || || ||||| | ||| || || Sbjct 144408 ATGCAGATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCA 144467 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || || |||||| ||||| ||||| | ||| || ||| Sbjct 144468 GATACTATTGAAAATGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 144527 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| ||| ||||||||| |||| |||| | || || | || || || Sbjct 144528 CAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAAT 144587 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||||||||| ||||| | ||| ||||||| Sbjct 144588 ATTCAAAAAGAGTCTACCCTTCACTTGGTGTT 144619 >seq6 Length=291449 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326 |||| |||||||||||||| ||||| || || || |||||||| || | ||| || Sbjct 274313 TTTAGTATGCAAATATTTGTGAAAACGTTGACTGGAAAAACCATAACATTGGAAGTTGAA 274372 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 ||| ||||| ||| | || ||| |||||| || |||||||| | || Sbjct 274373 CCTTCTGATACAATCGAAAATGTGAAATCCAAGATTCAAGATAAAGAAGGTATTCCTCCA 274432 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 |||||||| |||||||||| ||| || || ||| |||| || | ||||| | | ||| Sbjct 274433 GATCAACAGAGACTTATTTTTGCCGGAAAGCAGTTGGAAGACGGAAGAACGCTTTCTGAT 274492 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAG 110487 || || || || ||||| ||||| || || |||| || || Sbjct 274493 TATAATATCCAGAAAGAGTCTACTTTACATTTGGTTTTGAG 274533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412839421357469