Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq6 105 5e-18 seq9 87.8 1e-12 >seq6 Length=291449 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 |||| |||||||| ||||| ||||| || || || |||||||| || | ||| || Sbjct 274313 TTTAGTATGCAAATATTTGTGAAAACGTTGACTGGAAAAACCATAACATTGGAAGTTGAA 274372 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 || ||||| ||| | || ||| |||||| ||||||||||| | || Sbjct 274373 CCTTCTGATACAATCGAAAATGTGAAATCCAAGATTCAAGATAAAGAAGGTATTCCTCCA 274432 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||| ||||||||||||| ||| || || ||| |||| |||| | ||| | | || Sbjct 274433 GATCAACAGAGACTTATTTTTGCCGGAAAGCAGTTGGAAGACGGAAGAACGCTTTCTGAT 274492 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || || || |||||||| || || |||| ||||| || |||| || Sbjct 274493 TATAATATCCAGAAAGAGTCTACTTTACATTTGGTTTTGAGGTTAAGAGGAGG 274545 >seq9 Length=249065 Score = 87.8 bits (96), Expect = 1e-12 Identities = 170/249 (68%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 ||||||||||| ||||| || ||| | || || || || ||||| | ||| || | Sbjct 143949 AAAATGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCC 144008 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||||| | | | || || |||||| || || |||||| | ||| || Sbjct 144009 TCAGATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGAC 144068 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || || | | |||| ||| ||||||||| |||| || | | || || | |||||| Sbjct 144069 CAACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGTACTTTGTCAGACTAC 144128 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792 || |||||||| |||||||| | ||| |||||||| | || |||||| | || | Sbjct 144129 AATATTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTT--GAGGGG--AGGCATGCA 144184 Query 107793 AATATTTGT 107801 ||||||||| Sbjct 144185 AATATTTGT 144193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398874695052337