Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq6 150 3e-31 seq54 138 2e-27 seq9 118 2e-21 seq63 113 7e-20 >seq6 Length=291449 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | ||||| || || |||||||| || || | || || |||| | | Sbjct 274320 TGCAAATATTTGTGAAAACGTTGACTGGAAAAACCATAACATTGGAAGTTGAACCTTCTG 274379 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| ||| || || ||| ||||||||| ||||| || ||||||| Sbjct 274380 ATACAATCGAAAATGTGAAATCCAAGATTCAAGATAAAGAAGGTATTCCTCCAGATCAAC 274439 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| |||||||| || || || || || || |||||| | | |||||||||| Sbjct 274440 AGAGACTTATTTTTGCCGGAAAGCAGTTGGAAGACGGAAGAACGCTTTCTGATTATAATA 274499 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || ||||| || ||| | ||||| || || | ||||||||||||| Sbjct 274500 TCCAGAAAGAGTCTACTTTACATTTGGTTTTGAGGTTAAGAGGAGGTA 274547 >seq54 Length=107229 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | |||||||| || |||||| |||| ||||||| | | Sbjct 11242 TGCAAATCTTTGTGAAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCTG 11183 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | || || || || |||||| ||||||||| ||||| || || |||| Sbjct 11182 ATACTATTGAGAACGTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCAAC 11123 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| ||||||||| | || || | | || || |||| ||||||| Sbjct 11122 AACGTTTAATCTTTGCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAATA 11063 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAA 146260 | || ||||| || ||| | || || || || || | ||||||||||| Sbjct 11062 TTCAGAAAGAGTCAACTCTTCACTTGGTGTTGCGTCTGAGAGGAGGTAA 11014 >seq9 Length=249065 Score = 118 bits (130), Expect = 2e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | || || | || || || || |||||| |||| || |||| | Sbjct 143953 TGCAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCAG 144012 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| |||| || || ||| || ||| || ||||||||||| || || |||| Sbjct 144013 ATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAAC 144072 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| |||||||| || || ||| | || || |||| || |||| Sbjct 144073 AACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGTACTTTGTCAGACTACAATA 144132 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | |||||||| || || | || || || || || || || ||||| | ||||||| Sbjct 144133 TTCAAAAAGAGTCTACCCTTCACTTGGTGTTGCGTTTGAGGGGAGGCATGCAAATATT 144190 >seq63 Length=104598 Score = 113 bits (124), Expect = 7e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 146049 ACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTA 146108 ||| | || || || || |||||| | || || || | | |||||||||| |||| ||| Sbjct 60555 ACACTTACTGGGAAGACCATTACTTTGGAAGTTGAGCCTTCCGATACTATTGAAAACGTA 60614 Query 146109 AAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCA 146168 || || |||||| || ||||| || || || ||||||||| | | || |||||| Sbjct 60615 AAGTCCAAGATACAAGACAAGGAAGGTATCCCTCCGGATCAACAACGTTTGATATTTGCA 60674 Query 146169 GGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACT 146228 || || ||| |||| ||| ||||| || | ||||||||||| || |||||||| ||| Sbjct 60675 GGCAAGCAACTAGAAGATGGAAGAACTTTGTCTGATTATAATATCCAGAAAGAATCCACT 60734 Query 146229 ATCCATTTAGTA 146240 | || || ||| Sbjct 60735 TTGCACTTGGTA 60746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786162144874360