Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq9 178 1e-39 seq54 174 1e-38 seq63 104 2e-17 >seq9 Length=249065 Score = 178 bits (196), Expect = 1e-39 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29558 GTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG 29617 |||||||||||||||||| |||||| ||||| || || ||||||||||| ||||| || | Sbjct 144636 GTCCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTG 144577 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 | || ||| ||| || | ||||| |||||| | ||||| | ||| || || || | Sbjct 144576 ACAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGG 144517 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 ||||||| || |||||||| ||| || | |||||| |||| | ||| || || |||| Sbjct 144516 GAATACCTTCCTTGTCTTG-AATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCA 144458 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| ||||| || ||||| | || || |||||||||||||| Sbjct 144457 ACTTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATCTGCAT 144408 Score = 165 bits (182), Expect = 6e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||||||||| |||||| ||||| || || ||||||||||| ||||| || | Sbjct 144406 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGAC 144347 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || | ||||| |||||| | ||||| | ||| || || || ||| Sbjct 144346 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144287 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || |||||||| ||| || | ||||| |||| | ||| || || |||| || Sbjct 144286 ATACCTTCCTTGTCTTG-AATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAAC 144228 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| ||||| || ||||| | || || |||||||| ||||| Sbjct 144227 TTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 144180 Score = 158 bits (174), Expect = 9e-34 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||||||||| |||||| ||||| || || ||||||||||| || || || | Sbjct 144178 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGAC 144119 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | ||||| |||||| | ||||| | ||| || || || ||| Sbjct 144118 AAAGTACGGCCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144059 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| ||| || | ||||| |||| | ||| || || |||| || Sbjct 144058 ATGCCTTCCTTGTCTTG-AATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAAC 144000 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||||||| ||||| || ||||| | || || |||||||| |||||||| Sbjct 143999 TTCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCATTTT 143949 >seq54 Length=107229 Score = 174 bits (192), Expect = 1e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||||||||||||||||||||| ||||| || || ||||| ||||| ||||| || | Sbjct 11244 TCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGA 11303 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || ||| || || |||||||| |||||| | || || | ||| || || || || Sbjct 11304 TAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGG 11363 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || ||||| ||||||| ||| ||||| | || | ||| |||||| ||||||| Sbjct 11364 AATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTAC 11423 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| ||||| || || || | ||||| ||||| || |||||| Sbjct 11424 TTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11472 Score = 174 bits (192), Expect = 1e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||||||||||||||||||||| ||||| || || || || ||||| ||||| || | Sbjct 11472 TCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCTGA 11531 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || ||| || || |||||||| |||||| | || || | ||| || || || || Sbjct 11532 TAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGG 11591 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || ||||| ||||||| ||| |||||| | || | ||| |||||| ||||||| Sbjct 11592 AATTCCTTCTTTATCTTGTATCTTTGACTTGACATTCTCAATAGTATCAGAAGGTTCTAC 11651 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| ||||| || || || | ||||| ||||| || |||||| Sbjct 11652 TTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11700 Score = 174 bits (192), Expect = 1e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||||||||||||||||||||| ||||| || || || || ||||| ||||| |||| Sbjct 11700 TCCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCCGA 11759 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || ||| || || |||||||| |||||| | || || | ||| || || || || Sbjct 11760 TAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAGG 11819 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || ||||| ||||||| ||| ||||| | || | ||| |||||| ||||||| Sbjct 11820 AATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTAC 11879 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| ||||| || || || | ||||| ||||| || |||||| Sbjct 11880 TTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11928 Score = 159 bits (176), Expect = 3e-34 Identities = 180/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 29547 ATTTTATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAAT 29606 |||||| | | ||||| |||| ||||| |||||| ||||| || || ||||| ||||| Sbjct 11004 ATTTTAACAGTTACCTCCTCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAAT 11063 Query 29607 GTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTG 29666 ||||| || | | || ||| || || |||||||| |||||| | || || | ||| Sbjct 11064 ATTATAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTG 11123 Query 29667 CTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTC 29726 || || || ||||| || ||||| ||||||| ||| ||||| | || | ||| || Sbjct 11124 TTGGTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATC 11183 Query 29727 AGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| |||||||||||||||| ||||| || || || | ||||| ||||| || ||||| Sbjct 11184 AGAAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11243 Query 29787 T 29787 | Sbjct 11244 T 11244 >seq63 Length=104598 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || | ||||||||||| || || |||||||| | | || | ||| || Sbjct 60745 ACCAAGTGCAAAGTGGATTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTCT 60686 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 ||||| ||||| ||| ||||||| | ||| |||||||| || ||||| || ||||||||| Sbjct 60685 AGTTGCTTGCCTGCAAATATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTGT 60626 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || || || |||| | ||| || ||| | || ||||| | ||| || || || Sbjct 60625 ATCTTGGACTTTACGTTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTAATGGTCTTC 60566 Query 29758 CCAGT 29762 ||||| Sbjct 60565 CCAGT 60561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217167126053