Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq36 508 6e-139 >seq36 Length=158315 Score = 508 bits (562), Expect = 6e-139 Identities = 726/1020 (71%), Gaps = 2/1020 (0%) Strand=Plus/Plus Query 158766 AGAGGATGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGC 158825 ||||| ||||| ||| || | || || ||||| ||||| ||||| || || ||| |||| Sbjct 39768 AGAGGGTGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTATTGGA 39827 Query 158826 TGGTCTGGACTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGC 158885 ||||| || | || ||| | || | | ||||| ||| | || | ||| |||| || Sbjct 39828 TGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTACAGGT 39887 Query 158886 ACGACTTTCGCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGGTGCA 158945 || ||||| | ||| |||||||| ||||| | ||| |||| ||| | || || Sbjct 39888 ACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAGGATGT 39947 Query 158946 AACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTT 159005 || ||| | || || ||||| || | ||| || || |||||| || || | | || Sbjct 39948 AATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCATTATTATTT 40007 Query 159006 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGG 159065 | ||||| || || |||||||| ||||| || ||| ||| |||| || || ||| Sbjct 40008 TTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTCTTTGG 40067 Query 159066 AATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTT-CGCCAGTTTGA 159124 | |||| || | || ||||| |||||| | || ||||| || || || || ||||| Sbjct 40068 ACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTT-TGTTTGCGTCAATTTGA 40126 Query 159125 ACTGGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGC 159184 | | || | | |||| || | || |||||||| || || || || || || ||||| Sbjct 40127 AATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACCAATTGC 40186 Query 159185 TGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCC 159244 |||||||| || || ||||| || |||||||| || | ||||||||||| ||||| Sbjct 40187 AGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTTTGCTCC 40246 Query 159245 GTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTG 159304 ||||| || || || || || | || | | || ||||||| ||||| ||||| Sbjct 40247 TAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCATAATTG 40306 Query 159305 GACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATC 159364 ||| |||| || || ||||||||||| |||||||| || || || |||||| | || | Sbjct 40307 GACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATTACTTTG 40366 Query 159365 TGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACAC 159424 |||||||||||| | || || || |||||||||| ||| ||||| ||| || || || Sbjct 40367 TGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGCTAATAC 40426 Query 159425 CTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCG 159484 || | ||| ||| |||| ||| ||||| |||||||| ||||| || || || || Sbjct 40427 TTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGCTAATCG 40486 Query 159485 CTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTAT 159544 || ||||| || || || || |||| ||||||||||| | ||||| ||||| ||||| Sbjct 40487 TTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTTTTTTAT 40546 Query 159545 GTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCT 159604 | | |||||||| |||| || |||||||| | |||||| || || || ||||| | Sbjct 40547 GCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACTTGCATT 40606 Query 159605 CAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATT 159664 ||| | ||||| || ||||| || |||||| | | || ||||| || |||||||| Sbjct 40607 AAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCCAGAATT 40666 Query 159665 TGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACC 159724 ||| || || || || || || | ||||| |||||||| || | || ||| ||||| | Sbjct 40667 TGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGATGGCAAC 40726 Query 159725 TGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 |||||||| |||||||| || | |||||||| || ||| ||||| | || || || Sbjct 40727 ACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATGC 40786 Score = 448 bits (496), Expect = 5e-121 Identities = 706/1003 (70%), Gaps = 10/1003 (1%) Strand=Plus/Minus Query 157060 TGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTTATGATTCCA 157119 ||| | ||| ||| | || ||| | || | |||||||| || || | ||||| || Sbjct 27756 TGGATTACTAGCACAGAAAATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCT 27697 Query 157120 ACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGA 157178 ||||| || |||| || ||||| || || ||| ||| |||| || || || ||||| Sbjct 27696 ACATTACTAACAGCTAC-ATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGA 27638 Query 157179 TATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTC 157238 ||| ||||||||| | ||||||||| | || || | | ||||| || || || || | Sbjct 27637 TATAGACGGTATTAGAGAACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAAC 27578 Query 157239 TGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGC 157298 |||||| |||| ||| | || || ||||| || | || ||||| || || |||||||| Sbjct 27577 TGGTGCTATTGTACCTACATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGC 27518 Query 157299 AGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTT 157358 |||||| | ||||| ||||| || || || ||||||| || | |||| || ||||| Sbjct 27517 AGCATCTTTAGATGAATGGCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTT 27458 Query 157359 CCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTAT 157418 | | || || || | ||| |||||||||||||| |||||| | || ||| | || || Sbjct 27457 CTTTATTGGAATTTGTGCATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAAT 27398 Query 157419 GCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCT 157478 ||| || ||||| || || | ||| || || || ||||| || | || ||||| | Sbjct 27397 GCGTCCTTGGATAGCCGTAGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTAT 27338 Query 157479 CGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTAC 157538 |||||||| | || |||||| ||| || |||| |||||| | ||||| |||||||| Sbjct 27337 TATCTATCCTATTGGACAAGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTAC 27278 Query 157539 TTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACAT 157598 |||||| | |||| | || ||||| || || || |||||| | ||||||||||| || || Sbjct 27277 TTTTAATTTTATGTTAGTTTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATAT 27218 Query 157599 GCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGT 157658 | | || |||||||| ||||| || || || || || ||| |||||||| ||| || Sbjct 27217 GATGGGTGTTGCTGGTGTATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGT 27158 Query 157659 TACTTCCTCGCTTGTT-CGTGAAACAACTGAAACAGAGTCACAGAACTATGGTTACAAGT 157717 ||||| | ||| | ||||||||||| || | ||||| ||| ||||||| || | Sbjct 27157 AACTTCAA-GTTTGATACGTGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAAT 27099 Query 157718 TCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTGA 157777 | || |||||| | || || || |||||||||||||| || ||||| || || | | | Sbjct 27098 TTGGCCAAGAATATGAAACTTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAA 27039 Query 157778 TCTTCCAATACGCTTCATTCAACAA--CA-GCAGAAGTCTTCACTTCTTCCTCGCCGCAT 157834 | |||||||| || || || || || || | | || |||||| | || || Sbjct 27038 TTTTCCAATATGCAAGCTTTAATAATTCACGCTCA---TTACATTTCTTCTTAGCTTTAT 26982 Query 157835 GGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCA 157894 |||| || || | || ||| |||| | | || | ||||| |||||||| ||| | | Sbjct 26981 GGCCAGTAGTATGTATTTGGCTCACATCTTTAGGTATCAGCACAATGGCATTTAACTTAA 26922 Query 157895 ACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGG 157954 | || || || || || || || | ||||| ||| || | || | || || |||| Sbjct 26921 ATGGATTTAATTTTAATCAATCTGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGG 26862 Query 157955 CAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACA 158014 | ||| | | || || || | | || || ||||| |||||||| ||||| ||||| | Sbjct 26861 CTGATATTTTAAATCGTGCAAATTTAGGAATAGAAGTAATGCATGAACGTAATGCACATA 26802 Query 158015 ACTTCCCACTGGATCTTGCTGCTGCAGAATCAACACCTGTTGC 158057 |||| || || ||| | || || || ||| ||| ||||| Sbjct 26801 ACTTTCCTCTAGATTTAGCAAGTGAAGTATCTTTACCAGTTGC 26759 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 158205 AGTGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAACT 158264 ||||| || |||||||| || |||| ||||| |||||| |||| | ||| | || Sbjct 69663 AGTGTCCTGATGATCAATATATATTAGATGCAGCTGAAGAACAAGGATTAGATCTACCCT 69722 Query 158265 ACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTG 158324 | |||||| | || || || || ||| | |||||||||||| | || ||| || | Sbjct 69723 ATTCTTGTAGAGCAGGAGCATGTTCTACTTGTGCAGGTAAACTGTTAGAAGGACAAGTAG 69782 Query 158325 ATCAGAGTGATCAGTCGTTCCTAGACGATGATCAAATCGCAGCAGGATTTGTTCTTACGT 158384 |||| ||||||||| || ||||| |||||||| | |||||||||||| || || | Sbjct 69783 ATCAATCTGATCAGTCATTTCTAGATGATGATCAGGTAAAAGCAGGATTTGTCCTAACAT 69842 Query 158385 GTGTAGCATATCCAAC 158400 |||| |||||||| || Sbjct 69843 GTGTTGCATATCCTAC 69858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545270648706640