Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq36 482 3e-131 >seq36 Length=158315 Score = 482 bits (534), Expect = 3e-131 Identities = 728/1029 (71%), Gaps = 6/1029 (1%) Strand=Plus/Plus Query 178925 CAACGAGGGGCTGGTTCGATGTCTTGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTG 178984 ||| ||||| |||||||| | | ||||| ||||| || || ||||| ||||||||| Sbjct 39765 CAAAGAGGG--TGGTTCGACTTAGTTGATGATTGGCTAAAACGTGATCGATTTGTCTTTA 39822 Query 178985 TGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTA 179044 | || ||||| || | |||||| |||| | | ||||| || | || | ||| ||| Sbjct 39823 TTGGATGGTCAGGTTTGCTACTTTTTCCATGTTCATATCTAGCTCTAGGTGCCTGGTTTA 39882 Query 179045 CTGGGACAGCTTTTGTTACGAGTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAG 179104 | || ||| |||||||||| |||||| || |||||| | ||| ||| ||| | |||| Sbjct 39883 CAGGTACAACTTTTGTTACTTCTTGGTATACGCATGGTTTAGCTTCTTCTTATTTAGAAG 39942 Query 179105 GTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTC 179164 | ||| ||| | || || || || || | ||||| || |||||| || || || Sbjct 39943 GATGTAATTTTTTAACCGCTGCAGTATCAAGTCCTGCAAATAGTATGGGACACTCA-TTA 40001 Query 179165 TTCTACTT-TGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGA 179223 || | || ||||| || || |||| || |||| | ||||| ||| |||| || Sbjct 40002 TTATTTTTATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGT 40061 Query 179224 CTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTT-CGTCA 179282 || |||| ||| ||| | || ||||| || ||| | || || || || || ||||| Sbjct 40062 CTTTGGACTTTTACTGCTTTACATGGTGCTTTTGCCTTGATAGGTTTT-TGTTTGCGTCA 40120 Query 179283 GTTTGAACTGGCACGTCTCATCGGTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCC 179342 |||||| | || | | |||| || | || |||||||| || |||||| | || || Sbjct 40121 ATTTGAAATAGCCAGATTAGTCGGAATTAGGCCATACAATGCAATAGCTTTTTCAGGACC 40180 Query 179343 TATTGCCGTATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTT 179402 ||||| || || ||| |||||||| || || |||||||| ||| | |||||||| || Sbjct 40181 AATTGCAGTTTTTGTTTCAGTATTTCTTATTTATCCACTTGGGCAAGCTAGTTGGTTTTT 40240 Query 179403 TGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCA 179462 ||| || ||||| ||||| || |||||| |||| | | || |||||||||||||| Sbjct 40241 TGCTCCTAGTTTTGGAGTTGCAGCTATCTTTCGATTTATTTTATTTTTACAAGGTTTCCA 40300 Query 179463 CAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCT 179522 || ||||| | || || ||||| |||||||| ||||| || || || || || || | Sbjct 40301 TAATTGGACTTTAAATCCATTTCATATGATGGGTGTTGCTGGAATACTCGGAGGAGCATT 40360 Query 179523 GCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGC 179582 || | |||||||||||||| ||||||||||||||||| | |||||||| ||| || Sbjct 40361 ACTTTGTGCTATTCATGGAGCGACTGTAGAGAATACATTATTCGAAGATGGCGAAGCTGC 40420 Query 179583 AAACACATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGC 179642 || || || | || || | || ||| ||||| || ||||| |||||||| || Sbjct 40421 TAATACTTTCAGGGCTTTTACACCAACACAATCAGAGGAAACTTATTCAATGGTTACGGC 40480 Query 179643 GAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTT 179702 || ||||||||||| || || || || ||| | ||| || || | ||| | || || Sbjct 40481 TAATCGTTTTTGGTCACAAATTTTTGGTGTTGCATTTTCTAACAAAAGATGGCTACATTT 40540 Query 179703 CTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCT 179762 |||| ||| ||||| || || | || | ||| |||||||| ||||| || || Sbjct 40541 TTTTATGCTATTTGTGCCAGTTACAGGATTATGGACAAGCTCTATTGGTATCATAGGACT 40600 Query 179763 AGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCC 179822 || | ||| | ||||| ||||||||||| |||||| | | || ||||| || || Sbjct 40601 TGCATTAAATTTACGTGCATATGATTTTGTCTCTCAAGAATTACGTGCCGCAGAGGACCC 40660 Query 179823 TGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTT 179882 || || ||||| || ||||| || || | ||||| |||||||| || | || ||| | Sbjct 40661 AGAATTTGAGACTTTTTATACTAAAAATTTACTTCTAAATGAAGGTATAAGAGCATGGAT 40720 Query 179883 GGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGG 179942 |||| | ||||||||||||||||| || | |||||||| || || |||| |||| Sbjct 40721 GGCAACACAAGATCAACCACATGAAAATTTTGTATTCCCAGAGGAGGTTTTACCACGTGG 40780 Query 179943 TAACGCACT 179951 || || || Sbjct 40781 AAATGCCCT 40789 Score = 470 bits (520), Expect = 2e-127 Identities = 682/959 (71%), Gaps = 3/959 (0%) Strand=Plus/Minus Query 177585 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177644 || || ||||| | |||||||| || ||| | ||||| || || | | |||| || Sbjct 27738 AATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACAGCTAC- 27680 Query 177645 ATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGA 177703 ||||| || || | | || | |||||||| || || || || ||||| || | || Sbjct 27679 ATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGA 27620 Query 177704 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATC 177763 ||| || | || ||| | | ||||| || || || || ||||||| ||||||| | Sbjct 27619 ACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGTACCTAC 27560 Query 177764 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 177823 || || ||||| || | || |||||||| || |||||||| ||||| | ||||| || Sbjct 27559 ATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGATGAATG 27500 Query 177824 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGC 177883 ||| ||||| || ||||||| || | |||| || |||||| |||| || || | ||| Sbjct 27499 GCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAATTTGTGC 27440 Query 177884 ATATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGT 177943 ||||||||||||||| |||||| | || ||||| || ||||| || ||||| || Sbjct 27439 ATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCGT 27380 Query 177944 TGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAGTCTATCCTTTCGGTCA 178003 || | ||| || |||||||| ||||| | || || ||| | |||||||| | || || Sbjct 27379 AGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTATTGGACA 27320 Query 178004 AGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGT 178063 |||| || || |||| |||||| | ||||| |||||||||||||| | ||| | || Sbjct 27319 AGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAGT 27260 Query 178064 ATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGT 178123 |||||||| ||||| ||||| | ||||| ||||| || ||| | ||||||||||| || Sbjct 27259 TTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTGT 27200 Query 178124 ATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCG 178183 ||| || || || | || ||| ||||| || ||| || ||||| | | || Sbjct 27199 ATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAACTTCAAGTTTGATACG 27140 Query 178184 TGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAAC 178243 ||| || ||||| | |||||| ||| ||||||| || || || |||||| | ||||| Sbjct 27139 TGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATATGAAAC 27080 Query 178244 ATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTT 178303 ||||||||||| || || |||||||| || || | || || |||||||||||| || Sbjct 27079 TTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGCTT 27020 Query 178304 CAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTT 178363 || || || || ||| | || |||||| | || |||||| ||||| | || ||| | Sbjct 27019 TAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGGCT 26960 Query 178364 CACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178423 ||| | | ||| | ||| |||||||||||| | |||||||| || || || || || Sbjct 26959 CACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAATCAATC 26900 Query 178424 CATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGG 178483 | | || |||||| | || | || || ||||| || | | || ||||| Sbjct 26899 TGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCGTGCAAA 26840 Query 178484 TCTCGGCATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGATCTTGCA 178542 | | || || ||||| ||||| ||| | ||| ||||||||||| || || ||| | ||| Sbjct 26839 TTTAGGAATAGAAGTAATGCATGAACGTAAT-GCACATAACTTTCCTCTAGATTTAGCA 26782 Score = 138 bits (152), Expect = 1e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 138518 TTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTC 138577 |||| ||| |||||||||| || || | ||||| ||||| ||| ||| | ||||| | Sbjct 69660 TTGAGTGTCCTGATGATCAATATATATTAGATGCAGCTGAAGAACAAGGATTAGATCTAC 69719 Query 138578 CCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTG 138637 |||| || ||| | || || ||||||||||| ||||| |||||| | | |||||| | Sbjct 69720 CCTATTCTTGTAGAGCAGGAGCATGTTCTACTTGTGCAGGTAAACTGTTAGAAGGACAAG 69779 Query 138638 TAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGA 138697 ||||||| ||||| ||||| || || |||||||| || | |||||||||| || | | Sbjct 69780 TAGATCAATCTGATCAGTCATTTCTAGATGATGATCAGGTAAAAGCAGGATTTGTCCTAA 69839 Query 138698 CTTGCGTAGCATACCCCAC 138716 | || || ||||| || || Sbjct 69840 CATGTGTTGCATATCCTAC 69858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605663921826280