Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq6 228 2e-54 seq54 224 2e-53 seq9 179 7e-40 seq63 172 1e-37 seq393 95.1 2e-14 seq4 91.5 3e-13 >seq6 Length=291449 Score = 228 bits (252), Expect = 2e-54 Identities = 188/229 (82%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | || ||| || || | |||||| |||||||| ||||||||||||| Sbjct 274547 TACCTCCTCTTAACCTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCAG 274488 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || |||| |||||||| | || ||||| ||||| || ||||| ||||||||||||| Sbjct 274487 AAAGCGTTCTTCCGTCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGAG 274428 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||||||||| | ||| |||||||| || |||||| |||||| | Sbjct 274427 GAATACCTTCTTTATCTTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCAA 274368 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| ||||| || || || |||||||| || |||||||| ||||| Sbjct 274367 CTTCCAATGTTATGGTTTTTCCAGTCAACGTTTTCACAAATATTTGCAT 274319 >seq54 Length=107229 Score = 224 bits (248), Expect = 2e-53 Identities = 193/239 (81%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 82573 TTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATAT 82632 |||| || |||||||||||| ||||| || ||||| ||||| || |||||||| |||| Sbjct 11006 TTTAACAGTTACCTCCTCTCAGACGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATAT 11065 Query 82633 TATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTT 82692 |||| || |||||| | | ||||||||| |||||||| ||||||||||||| | ||||| Sbjct 11066 TATAGTCTGATAGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTT 11125 Query 82693 GATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCAT 82752 | || ||||| |||||||| |||||||| ||||||| || || || ||||| |||||| Sbjct 11126 GGTCAGGAGGAATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAG 11185 Query 82753 TAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||||||| | ||| || ||||| ||||| | || || ||||| || |||||| Sbjct 11186 AAGGTTCTACTTCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11244 Score = 223 bits (246), Expect = 7e-53 Identities = 186/228 (82%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||||||||| || ||||| ||||| || |||||||| |||||||| || ||| Sbjct 11245 CCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGAT 11304 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||||||||| |||||||| ||||||||||||| | |||||| || ||||| Sbjct 11305 AGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGA 11364 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| |||||||| ||||||| || || || ||||| |||||| |||||||||| Sbjct 11365 ATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACT 11424 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||| || ||||| ||||| | || || ||||| || |||||| Sbjct 11425 TCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11472 Score = 223 bits (246), Expect = 7e-53 Identities = 186/228 (82%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||||||||| || ||||| ||||| || || ||||| |||||||| || ||| Sbjct 11473 CCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCTGAT 11532 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||||||||| |||||||| ||||||||||||| | |||||| || ||||| Sbjct 11533 AGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGA 11592 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| |||||||| ||||||| || ||||| ||||| |||||| |||||||||| Sbjct 11593 ATTCCTTCTTTATCTTGTATCTTTGACTTGACATTCTCAATAGTATCAGAAGGTTCTACT 11652 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||| || ||||| ||||| | || || ||||| || |||||| Sbjct 11653 TCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATT 11700 Score = 219 bits (242), Expect = 8e-52 Identities = 187/231 (81%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||||||||| || ||||| ||||| || || ||||| |||||||| || ||| Sbjct 11701 CCTCCCCTCAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCCGAT 11760 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||||||||| |||||||| ||||||||||||| | |||||| || ||||| Sbjct 11761 AGAGTACGACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAGGA 11820 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| |||||||| ||||||| || || || ||||| |||||| |||||||||| Sbjct 11821 ATTCCTTCTTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACT 11880 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | ||| || ||||| ||||| | || || ||||| || |||||| || Sbjct 11881 TCAAGAGTAATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCATTCTT 11931 >seq9 Length=249065 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||||||||| || ||||| || ||||| ||||| || |||||||| || || Sbjct 144634 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGAC 144575 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | ||| ||||| | ||||| |||||||| || | | |||||| ||||| || Sbjct 144574 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144515 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||||||||| | || ||||||||||| ||||| ||||| ||| Sbjct 144514 ATACCTTCCTTGTCTTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAACT 144455 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || || | ||||| |||||||||||||| Sbjct 144454 TCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATCTGCAT 144408 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||||||||| || ||||| || ||||| ||||| || |||||||| || || Sbjct 144406 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGAC 144347 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | ||| ||||| | ||||| |||||||| || | | |||||| ||||| || Sbjct 144346 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144287 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||| Sbjct 144286 ATACCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACT 144227 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || || | ||||| |||||||| ||||| Sbjct 144226 TCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 144180 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||||||||| || ||||| || ||||| ||||| || ||||| || || || Sbjct 144178 CCTCCCCTCAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGAC 144119 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || ||||| | ||||| |||||||| || | | |||||| ||||| || Sbjct 144118 AAAGTACGGCCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGA 144059 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||||||||| | || || |||||||| ||||| ||||| ||| Sbjct 144058 ATGCCTTCCTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACT 143999 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | ||| || ||||| || || | ||||| |||||||| |||||| || Sbjct 143998 TCAAGAGTAATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCATTTTT 143948 >seq63 Length=104598 Score = 172 bits (190), Expect = 1e-37 Identities = 154/193 (80%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || ||||||| ||| ||||||||||| |||||||||||||| | | |||| || |||||| Sbjct 60745 ACCAAGTGCAAAGTGGATTCTTTCTGGATATTATAATCAGACAAAGTTCTTCCATCTTCT 60686 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || || ||||| || | | ||||||||| ||||| || |||||||| ||||| Sbjct 60685 AGTTGCTTGCCTGCAAATATCAAACGTTGTTGATCCGGAGGGATACCTTCCTTGTCTTGT 60626 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| | ||||| |||||||| ||||| ||| || ||||||||||| || ||||| Sbjct 60625 ATCTTGGACTTTACGTTTTCAATAGTATCGGAAGGCTCAACTTCCAAAGTAATGGTCTTC 60566 Query 82782 CCTGTCAACGTCT 82794 || || | |||| Sbjct 60565 CCAGTAAGTGTCT 60553 >seq393 Length=2618 Score = 95.1 bits (104), Expect = 2e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||||||||| ||| ||| || ||||| ||||| || ||||| |||||||||| ||| Sbjct 2 TTATCTTGAATTTTTCGTTTCACGTTTTCGATCGTGTCGTTAGGCTCTACTTCCAGAGTG 61 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || || ||||| || | ||| |||||||||| |||||| || Sbjct 62 ATGGTTTTGCCGGTAAGCGTTTTTACAAATACTTGCATTTTT 103 >seq4 Length=289758 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 143985 GATCCAGTCTTGCATATAGAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTA 144044 || || || |||||||| || || ||| |||||| |||| ||| | || |||||| || Sbjct 40604 GACCCCGTTTTGCATATTGAGCTCCGGAAATGGGCAGATGCCTTTCTAATTGCGCCCATA 40545 Query 144045 ACAGCAAATACGTTAGCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATA 144104 || || || |||||||| || || | ||||| ||| || | | || | Sbjct 40544 GATGCTAACACACTAGCAAAAGCTGCAGTAGGCCTTTGCGACAATCTAGTTTCCTCAGTT 40485 Query 144105 GTAAGAGCCTGGGA---TATAAATAAACCTCTTATTTTTTGC-CCCGCTATGAATACCCT 144160 | ||||||||||| ||| || ||||| ||| || |||| |||||||||||||| | Sbjct 40484 ATTAGAGCCTGGGACAGTATGAACAAACCACTT-TTAGTTGCTCCCGCTATGAATACGGT 40426 Query 144161 TATGTGGGAACATCCTATTACAGAAAAACA 144190 ||||||||||| ||| | ||| | |||| Sbjct 40425 AATGTGGGAACAGCCTTTAACACATCAACA 40396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981821753006787