Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 6e-15 seq6 95.1 2e-14 >seq4 Length=289758 Score = 96.9 bits (106), Expect = 6e-15 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 143004 GATCCCGTCTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTA 143063 || ||||| |||||||| || || ||| |||||| |||| ||||| || |||||| || Sbjct 40604 GACCCCGTTTTGCATATTGAGCTCCGGAAATGGGCAGATGCCTTTCTAATTGCGCCCATA 40545 Query 143064 ACGGCAAATACGTTAGCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATA 143123 || || || |||||||| || || | ||||| ||| || | | || | Sbjct 40544 GATGCTAACACACTAGCAAAAGCTGCAGTAGGCCTTTGCGACAATCTAGTTTCCTCAGTT 40485 Query 143124 GTAAGAGCCTGGGA---TATAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTT 143180 | ||||||||||| ||| || ||||| ||| | || |||||||||||||| | Sbjct 40484 ATTAGAGCCTGGGACAGTATGAACAAACCACTTTTAGTTGCTCCCGCTATGAATACGGTA 40425 Query 143181 ATGTGGGAACATCCTATTACAGAAAAACA 143209 ||||||||||| ||| | ||| | |||| Sbjct 40424 ATGTGGGAACAGCCTTTAACACATCAACA 40396 >seq6 Length=291449 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81646 AGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC-------- 81697 |||| | || ||||| |||||||||||||| || ||||| | |||||| ||| Sbjct 274516 AGTAGACTCTTTCTGGATATTATAATCAGAAAGCGTTCTTCCGTCTTCCAACTGCTTTCC 274457 Query 81698 ---AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTT 81754 ||| || ||||| |||||| ||||| | || |||| |||||||||||||| | ||| Sbjct 274456 GGCAAAAATAAGTCTCTGTTGATCTGGAGGAATACCTTCTTTATCTTGAATCTTGGATTT 274397 Query 81755 TATATTTTCAATCGTAT 81771 | |||||| || |||| Sbjct 274396 CACATTTTCGATTGTAT 274380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903406310286880