Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq19 246 7e-60 seq62 125 2e-23 seq1 107 5e-18 seq12 93.3 1e-13 >seq19 Length=190679 Score = 246 bits (272), Expect = 7e-60 Identities = 499/734 (68%), Gaps = 10/734 (1%) Strand=Plus/Plus Query 110270 TATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACG 110329 |||||| |||| ||| |||| | | ||| || ||||| ||||||||| | ||||| Sbjct 25637 TATTAT---TTATGATCGAGACTTTTCTTATGATTACTTTGGATTCAAAACTTTAGAACG 25693 Query 110330 TGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCG 110389 | | |||||| | ||||| ||||| | | || ||||| || ||||| ||||| | | Sbjct 25694 TTCCTATTTATTACGTGTGGATGGCAAAGTGATAGAACGACCACAACATATGTTGATGAG 25753 Query 110390 TGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTAT- 110448 || || |||||||||| |||| | |||| || | || ||||||| ||| Sbjct 25754 AGTAGCTGTTGGTATTCACAAGGATGACTTGGAAGCAGTATTGGAGACTTATGAT-TATA 25812 Query 110449 TAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAG 110508 | | ||| | || ||||||| | ||||| |||| || || || ||| || Sbjct 25813 TGTCTCGAAAATACTTTACTCATGCTTCACCTACTTTATTCAATGCGGGTACTCCAAGAC 25872 Query 110509 GACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATG 110568 || || | ||||| || || || || | || || || |||||||| ||||||| Sbjct 25873 CTCAGTTATCCTCTTGTTTCCTATTAACTATGACTGAAGACTCCATTGAAGGAATTTATG 25932 Query 110569 ATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCAC-GTT 110627 || || | ||| | ||| |||||||||||| |||| || ||||| ||| | ||| Sbjct 25933 ATACTTTAAAAAGATGTGCAGTTATTTCTAAAAGTGCTGGTGGTATTGG-ATTGGCAGTT 25991 Query 110628 CATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTT 110687 |||||||| || ||| | | |||| | | || || |||| | ||| || Sbjct 25992 CATGATATACGTGCAACCAAATCTTATATTCGAGGTACCAATGGAACTTCTAATGGCATT 26051 Query 110688 GTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCA---AGGTGGTAAG 110744 ||||| ||| | |||| || || || ||||||| ||||||| |||| ||| || || Sbjct 26052 GTTCCTATGCTTCGAGTATTTAATGATACTGCAAGATATGTGGATCAAGGAGGAGGAAAA 26111 Query 110745 AGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTA 110804 ||||| || | |||||||| ||| | || ||||||||| | ||||| |||||||| ||| Sbjct 26112 AGAAAAGGAGCTTTTGCTATTTATTTGGAGCCTTGGCATGCCGATATTTTTGAATTTTTA 26171 Query 110805 GAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATG 110864 || | | || ||||| ||| |||||| | ||||||| ||||| ||||||| | Sbjct 26172 GATTTGAGAAAGAATCATGGAAAGGAAGAAAATCGAGCACGAGATTTGTTTTATGGTTTA 26231 Query 110865 TGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGT 110924 ||| || | |||||||| |||||| | || || | ||| | ||| | | | ||| Sbjct 26232 TGGGTTCCCGATTTATTTATGAAAAGAGTAGAAAAGGATGAGAAATGGAGTTTATTTTGT 26291 Query 110925 CCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAA 110984 || || |||| ||| | ||||| | || ||| |||||| | ||||| ||| Sbjct 26292 CCCAATGAAGCTCCAGGTTTGGCTGATTGTTGGGGTGAAGCATTTGAACAACTTTATGAA 26351 Query 110985 AAATATGAAAAAGA 110998 || |||||||| || Sbjct 26352 AAGTATGAAAAGGA 26365 >seq62 Length=89227 Score = 125 bits (138), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 131798 AAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACA 131857 ||||||||||| || ||| || | |||||||| | |||| | | || | |||| || Sbjct 48340 AAAAAGAAAGCGGATTGGTCTTTAAAATGGATAC--GATGTTCCAGC-AGTTTTGCTGAG 48284 Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917 | | || || ||||| || ||||| ||||||||||| ||| |||| ||| | || Sbjct 48283 CGTTTAGTTGCCTTTGCAGCAGTAGAAGGGATATTCTTTTCTGGTTCTTTTTGTTCCATA 48224 Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCG 131977 |||||| | ||||| || || ||||||||||| || | || |||||| | || || || Sbjct 48223 TTTTGGTTAAAGAAACGGGGCTTGATGCCTGGTCTTACTTTCTCCAATGAGTTGATATCA 48164 Query 131978 AGAGATGAAGCATTGCATACTGAATTTGCT 132007 ||||||||| |||||| |||||||||| Sbjct 48163 CGAGATGAAGGCTTGCATTGTGAATTTGCT 48134 >seq1 Length=465833 Score = 107 bits (118), Expect = 5e-18 Identities = 323/491 (66%), Gaps = 12/491 (2%) Strand=Plus/Minus Query 279818 AAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC-TCATTTAATGGA 279876 |||||||| || ||||| || |||| | ||| ||||| || || ||| || | Sbjct 42013 AAAGAACTTATTTTATTTTCACTTTCTGATAATGCTCGCTCTATACCCTCGGTTATTG-A 41955 Query 279877 TGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTAAA 279936 ||||||||||||| || ||||| || |||| | || || |||| || ||| | Sbjct 41954 TGGTTTGAAACCTAGTCAACGTAAAGTTTTATTTGGCTGCTTTAAAAAGAAGTTGACGAG 41895 Query 279937 GGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCACGG 279996 || || ||||| || || || |||||| | ||||| |||||| ||||||||| || Sbjct 41894 AGATATCAAAGTTGCGCAATTGGCCGGTTATATAGCAGAAAATGCAGCTTATCATCATGG 41835 Query 279997 TGAAGCGTCTCTTCAAGG-TGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAACA 280055 ||| ||||| ||| || | |||||||| | || ||| ||||| | | | | | Sbjct 41834 AGAAATGTCTC-TCATGGCAACGATTGTAGGATTGGCACAAAATTTTGTAGGTGCGTGTA 41776 Query 280056 ACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAATGGAAAAGATC 280115 | | ||||| | || ||||| |||||| ||||| | || |||||||| Sbjct 41775 ATATCAATCTTTTGGTTCCTTCCGGTCAGTTTGGTACTCGTTTACAAGGCGGAAAAGACG 41716 Query 280116 ATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATATTACAAACAAGTTAT---TTA 280172 || | ||||||||| ||| ||| | ||| | ||| ||| ||||| || Sbjct 41715 CTGCTTCTGCTCGTTATATATTTACCAGACTTGCTCCCATT----ACACGTTATCTCTTT 41660 Query 280173 TCA-ATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGTCTTGCTATTGAACCA 280231 || | | ||| |||| | | | | |||| || ||||| || | |||||||| Sbjct 41659 CCAGAAGCAGATGATGCCGTACTTCACTATTTAGAAGAAGATGGACTATCGATTGAACCC 41600 Query 280232 ACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAAGGAATTGGAACA 280291 | |||||| ||| ||||| ||| | || | || || |||||| |||| || || || Sbjct 41599 AATTATTATTGTCCTATTATTCCTCTCGTTTTAGTGAACGGTGCTGAAGGTATCGGTACT 41540 Query 280292 GGTTATTCTAC 280302 || | ||||| Sbjct 41539 GGATGGTCTAC 41529 >seq12 Length=221157 Score = 93.3 bits (102), Expect = 1e-13 Identities = 118/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGT-CAA 305388 ||||| || ||||| ||||| || ||||||||||||| || |||| |||| || | | Sbjct 965 GTTCTTTTTAATAGACAACCTTCCTTGCATAAAATGTCCATTATGGGTCATCGCGTTCGA 906 Query 305389 AGTATTATCTGGATTGA-CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447 | | || | ||| | | ||||| || ||| || |||| | || |||||||| | Sbjct 905 ATTCTTCCAT--ATTCAACTTTTCGTTTGAATTTATCTGCTACAAGTCCATATAATGCAG 848 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | |||||||| |||||||||||| |||| || ||||||| Sbjct 847 ACTTTGATGGTGATGAAATGAATTTGCACGTTCCTCAAT 809 Score = 93.3 bits (102), Expect = 1e-13 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 304885 TTTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATC 304944 |||||| |||||| |||| || | ||| ||||||| ||| |||| || | || Sbjct 1404 TTTACAGTATCATGTTGCGACTTATATGAATAATGAGATTCCTGGTCTTCCAAGGTCACT 1345 Query 304945 TCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCG 305004 ||| ||||||| | || | || | ||| ||||| | ||||| || || || | Sbjct 1344 TCAGCGATCTGGTCGTCCACTCAAAAGCATTTCTCAACGATTGAAAGGAAAGGAAGGAAG 1285 Query 305005 TATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACC 305064 ||||||||||| | ||||| ||||| || |||||| |||||||| || || || || Sbjct 1284 AATTCGAGGTAACTTGATGGGTAAACGAGTCGATTTTTCTGCAAGAACGGTCATTACTCC 1225 Query 305065 TGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAAC 305124 ||| || | ||| || | | ||| | |||||||| | |||||| | || | || Sbjct 1224 CGATCCTAATATTCGTTTGGACGAAGTTGGAGTTCCCAAGAGTATTGCTATGAACTTGAC 1165 Query 305125 ATTTCCAGA 305133 || ||||| Sbjct 1164 ATACCCAGA 1156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186806215785113