Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq6 152 1e-31 seq9 100 7e-16 seq54 96.9 8e-15 seq63 89.7 1e-12 >seq6 Length=291449 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| |||||| | || |||||||| || || |||||||| ||| |||||| Sbjct 274322 CAAATATTTGTGAAAACGTTGACTGGAAAAACCATAACATTGGAAGTTGAACCTTCTGAT 274381 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| ||||| || || ||||||||||| |||||||| ||| || || || Sbjct 274382 ACAATCGAAAATGTGAAATCCAAGATTCAAGATAAAGAAGGTATTCCTCCAGATCAACAG 274441 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||| || |||||||||||||||||||| ||||| || | | ||||| || || Sbjct 274442 AGACTTATTTTTGCCGGAAAGCAGTTGGAAGACGGAAGAACGCTTTCTGATTATAATATC 274501 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAG 206384 ||||||||||||||| | || | |||||||| Sbjct 274502 CAGAAAGAGTCTACTTTACATTTGGTTTTGAG 274533 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 204758 CTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCA 204817 |||||||| | || | ||||||||||||||||| |||||| |||| | || ||||| Sbjct 274533 CTCAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCAGAAAGCGTTCTTCCG 274474 Query 204818 TCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||| |||||||||||| || ||||| | |||||| Sbjct 274473 TCTTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGA 274435 >seq9 Length=249065 Score = 100 bits (110), Expect = 7e-16 Identities = 154/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| || |||||| || || ||||| || || || || ||| | ||||| ||| Sbjct 143949 AAAATG---CAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAA 144005 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || || || | ||| || ||| ||||||||||| || ||||| ||| || Sbjct 144006 CCCTCAGATACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGCATTCCCCCA 144065 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| ||| | | || || || || || |||||||||||||| | |||||| | || Sbjct 144066 GACCAACAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGTACTTTGTCAGAC 144125 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 ||||| | || ||||||||||| |||||| | || ||| Sbjct 144126 TACAATATTCAAAAAGAGTCTACCCTTCACTTGGTGTTG 144164 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| || || ||||| || || || || ||| | ||||| ||| || || Sbjct 144411 CAGATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCAGAT 144470 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||||||||| || ||||| ||| || ||| ||| Sbjct 144471 ACTATTGAAAATGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAACAA 144530 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || || || || || |||||||||||||| | |||||| | || || || | Sbjct 144531 CGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAATATT 144590 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 || ||||||||||| |||||| | || ||| Sbjct 144591 CAAAAAGAGTCTACCCTTCACTTGGTGTTG 144620 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || ||||| || || || || ||| | ||||| ||| || || Sbjct 144183 CAAATATTTGTGAAGACTCTCACTGGGAAGACTATTACTCTTGAAGTTGAACCCTCAGAT 144242 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||||||||| || ||||| ||| || ||| ||| Sbjct 144243 ACTATTGAAAACGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAACAA 144302 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || || || || || |||||||||||||| | |||||| | || || || | Sbjct 144303 CGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTGTCAGACTATAATATT 144362 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 || ||||||||||| |||||| | || ||| Sbjct 144363 CAAAAAGAGTCTACCCTTCACTTGGTGTTG 144392 >seq54 Length=107229 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || |||||||| || || ||| | ||||| ||| |||||| || | || Sbjct 11228 AAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCTGATACTATTGAGAAC 11169 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| |||||||||||| || ||| ||| | | ||||| Sbjct 11168 GTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCAACAACGTTTAATCTTT 11109 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | ||||| || | ||| | | || || || | ||||||||||| Sbjct 11108 GCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAATATTCAGAAAGAGTCA 11049 Query 206365 ACTCTTCACCTTGTTTTG 206382 ||||||||| | || ||| Sbjct 11048 ACTCTTCACTTGGTGTTG 11031 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || |||||||| || || ||| | ||||| ||| |||||| || | || Sbjct 11456 AAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCTGATACTATTGAGAAC 11397 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| |||||||||||| || ||| ||| | | ||||| Sbjct 11396 GTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCAACAACGTTTAATCTTT 11337 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | ||||| || | ||| | | || || || | ||||||||||| Sbjct 11336 GCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAATATTCAGAAAGAGTCA 11277 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 11276 ACTCTTCAC 11268 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || |||||||| || || ||| | ||||| ||| |||||| || | || Sbjct 11684 AAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCTGATACTATTGAGAAT 11625 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| |||||||||||| || ||| ||| | | ||||| Sbjct 11624 GTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCTGACCAACAACGTTTAATCTTT 11565 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | ||||| || | ||| | | || || || | ||||| ||||| Sbjct 11564 GCTGGTAAACAACTTGAAGACGGTCGTACTCTATCAGACTATAATATTCAGAAGGAGTCA 11505 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 11504 ACTCTTCAC 11496 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || |||||||| || || ||| | ||||| ||| |||||| || | || Sbjct 11912 AAAACTCTTACAGGAAAGACTATTACTCTTGAAGTAGAACCTTCTGATACTATTGAGAAC 11853 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| |||||||||||| || ||| ||| | | ||||| Sbjct 11852 GTCAAGTCAAAGATACAAGATAAAGAAGGAATTCCTCCCGACCAACAACGTTTAATCTTT 11793 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | ||||| || | ||| | | || || || | ||||| ||||| Sbjct 11792 GCTGGTAAACAACTTGAAGACGGTCGTACTCTATCGGACTATAATATTCAGAAGGAGTCA 11733 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 11732 ACTCTTCAC 11724 >seq63 Length=104598 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206180 TTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCG 206239 ||| | | || || || || || || || ||||||||||| || ||| || || | | Sbjct 60547 TTTTCTAGACACTTACTGGGAAGACCATTACTTTGGAAGTTGAGCCTTCCGATACTATTG 60606 Query 206240 AATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTA 206299 || |||||| ||||| ||||| || ||||| || ||||| ||| | | | Sbjct 60607 AAAACGTAAAGTCCAAGATACAAGACAAGGAAGGTATCCCTCCGGATCAACAACGTTTGA 60666 Query 206300 TCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 | || || || ||||| | ||||||||||| |||||| | ||||| || ||||||||| Sbjct 60667 TATTTGCAGGCAAGCAACTAGAAGATGGAAGAACTTTGTCTGATTATAATATCCAGAAAG 60726 Query 206360 AGTCTACTCTTCAC 206373 | || ||| | ||| Sbjct 60727 AATCCACTTTGCAC 60740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181814243479793