Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq36 455 9e-124 >seq36 Length=158315 Score = 455 bits (504), Expect = 9e-124 Identities = 678/954 (71%), Gaps = 6/954 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 || ||||| || | || ||||||||| | | ||||| || | || |||| || Sbjct 27738 AATCGTCTCTACATAGGTTGGTTTGGAGTATTAATGATCCCTACATTACTAACAGCTAC- 27680 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 ||||| || || |||| ||| || || || ||||||||||| || || || || | || Sbjct 27679 ATCTGTATTTATAATTGGATTTATAGCTGCTCCACCAGTTGATATAGACGGTATTAGAGA 27620 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 ||| || | ||| | | |||||||| || || ||| | || || | ||||| | Sbjct 27619 ACCAGTTTCAGGATCATTGTTATATGGAAATAATATTATAACTGGTGCTATTGTACCTA- 27561 Query 28839 CAGC-AATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAAT 28897 || | ||||| || ||| |||| ||||| || ||||||||||| || | ||||||| Sbjct 27560 CATCTAATGCAATAGGAATACATTTCTATCCTATTTGGGAAGCAGCATCTTTAGATGAAT 27501 Query 28898 GGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATG 28957 |||| || || || || || | || | | || || |||||| | ||||| | | || Sbjct 27500 GGCTATATAATGGCGGTCCTTATGAATTAATAGTTTTGCACTTCTTTATTGGAATTTGTG 27441 Query 28958 CTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTG 29017 | || |||||||| || |||||| | |||||||| || |||||| | || ||||| | Sbjct 27440 CATATATGGGACGTGAATGGGAATTAAGCTATCGTCTTGGAATGCGTCCTTGGATAGCCG 27381 Query 29018 TCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTC 29077 | || | ||||||||| || || || || | || || || | |||| || | || | Sbjct 27380 TAGCTTTCTCAGCTCCTGTTGCTGCAGCCACAGCTGTATTTATTATCTATCCTATTGGAC 27321 Query 29078 AAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGG 29137 ||||| |||| || | ||||| || |||||||| || || || || | ||| | | Sbjct 27320 AAGGTAGTTTTTCAGATGGTATGCCATTAGGTATTTCTGGTACTTTTAATTTTATGTTAG 27261 Query 29138 TGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAG 29197 | |||||||| |||||||| ||| | ||||| ||||| || ||| |||| |||||||| | Sbjct 27260 TTTTCCAAGCTGAACATAATATTTTAATGCATCCGTTTCATATGATGGGTGTTGCTGGTG 27201 Query 29198 TGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TG 29256 | || || || || ||||||||||||||||||| || ||||| || | | | ||| | Sbjct 27200 TATTTGGAGGTTCATTATTTAGTGCAATGCACGGCTCTCTTGTAAC-TTCAAGTTTGATA 27142 Query 29257 CGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAG 29316 ||||| || || || | ||| ||| ||||||| || ||||| |||||| | || Sbjct 27141 CGTGAAACAACAGAGAATGAGTCTGCAAACAATGGTTATAAATTTGGCCAAGAATATGAA 27082 Query 29317 ACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCT 29376 |||||||||||||| || ||||| ||||| |||||| | || || ||||||||||| Sbjct 27081 ACTTATAACATCGTTGCTGCTCATGGTTATTTTGGAAGATTAATTTTCCAATATGCAAGC 27022 Query 29377 TTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGG 29436 || |||||| || || |||| |||||| | ||| ||||| || ||| | |||||| Sbjct 27021 TTTAATAATTCACGCTCATTACATTTCTTCTTAGCTTTATGGCCAGTAGTATGTATTTGG 26962 Query 29437 TTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAG 29496 || | | || || | |||||||| ||||| | || || ||||| ||||| || Sbjct 26961 CTCACATCTTTAGGTATCAGCACAATGGCATTTAACTTAAATGGATTTAATTTTAATCAA 26902 Query 29497 TCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCT 29556 || || | || | || | || |||||||||||||||||| || | ||||| || Sbjct 26901 TCTGTTGTTGATTCTCAAGGAAGAGTAATTAATACTTGGGCTGATATTTTAAATCGTGCA 26842 Query 29557 AACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGAT 29610 || | || | |||||||||||||| |||||||| |||||||| || || ||| Sbjct 26841 AATTTAGGAATAGAAGTAATGCATGAACGTAATGCACATAACTTTCCTCTAGAT 26788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146664845863818