Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F000341285.1_202013-02-25] 433 sequences; 13,712,004 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq9 107 2e-18 seq26 96.9 3e-15 seq54 95.1 1e-14 seq6 91.5 1e-13 >seq9 Length=249065 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| ||||| ||||| || | | | |||||||||||||| |||||||| || ||||| Sbjct 144170 CAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTGTAGTCTGACAAAGTACG 144111 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | ||||||||| | | | || | ||| ||||| ||||| || |||||||| Sbjct 144110 GCCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATGCCTTC 144051 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| || || | | ||| | |||||| | || || ||||| | || Sbjct 144050 CTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGT 143991 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||| ||||| || | || || ||||| Sbjct 143990 AATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCAT 143952 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| ||||| ||||| || | | | |||||||||||||| || ||||| || ||||| Sbjct 144626 CAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACG 144567 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | ||||||||| | | | || | ||| ||||| ||||| || || ||||| Sbjct 144566 ACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTC 144507 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| || || | | ||| | |||||| | || || ||||| | || Sbjct 144506 CTTGTCTTGAATCTTGGACTTGACATTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGT 144447 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 | || || ||||| ||||| || | || ||||||||| || Sbjct 144446 AATAGTCTTCCCAGTGAGAGTCTTCACAAATATCTGCATGCCT 144404 Score = 100 bits (110), Expect = 3e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| ||||| ||||| || | | | |||||||||||||| || ||||| || ||||| Sbjct 144398 CAAACGCAACACCAAGTGAAGGGTAGACTCTTTTTGAATATTATAGTCTGACAAAGTACG 144339 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | ||||||||| | | | || | ||| ||||| ||||| || || ||||| Sbjct 144338 ACCATCTTCCAACTGTTTACCAGCAAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTC 144279 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| || || | | ||| | |||||| | || || ||||| | || Sbjct 144278 CTTGTCTTGAATCTTAGACTTGACGTTTTCAATAGTATCTGAGGGTTCAACTTCAAGAGT 144219 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 | || || ||||| ||||| || | || || |||||| || Sbjct 144218 AATAGTCTTCCCAGTGAGAGTCTTCACAAATATTTGCATGCCT 144176 >seq26 Length=183063 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 47130 TATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAAT 47189 |||||||||||||| ||||||||| ||||||| | ||| | ||||||||| | Sbjct 76902 TATATTGAGTTTGTTGCGGATCGTTTGTTGGTTGCTTTGGGATATGAGAAATATTTCCAG 76843 Query 47190 GCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTC 47249 |||| ||||||||||| | ||| | |||||| | || || || ||||| ||||| Sbjct 76842 TCTCGAAATCCGTTTGATTGGATGGAACTCATTTCTTTGGAAGGAAAGACCAACTTTTTT 76783 Query 47250 GAGAAACGAGTCGGAGAGTAT 47270 ||||| ||||| ||||| ||| Sbjct 76782 GAGAAGCGAGTGGGAGAATAT 76762 >seq54 Length=107229 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | |||||||||| ||||| || ||||| | ||||| Sbjct 11029 CGCAACACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACGACCG 11088 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || |||||||| | | |||||| ||| ||||| || ||||| || ||||||||| Sbjct 11089 TCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTCTTTA 11148 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||| || | | || | |||||| | || || ||||| | || | Sbjct 11149 TCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGTAATA 11208 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || |||||||| | || || ||||| Sbjct 11209 GTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11243 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| ||||| || | |||||||||| ||||| || ||||| | ||||| Sbjct 11253 CAAACGCAGCACCAAGTGAAGAGTTGACTCTTTCTGAATATTATAGTCTGATAGAGTACG 11312 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||||| || |||||||| | | |||||| ||| ||||| || ||||| || ||||| Sbjct 11313 ACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTC 11372 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| || ||| || | | || | |||||| | || || ||||| | || Sbjct 11373 TTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGT 11432 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || || |||||||| | || || ||||| Sbjct 11433 AATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11471 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| ||||| || | ||||||| || ||||| || ||||| | ||||| Sbjct 11481 CAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCTGATAGAGTACG 11540 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||||| || |||||||| | | |||||| ||| ||||| || ||||| || ||||| Sbjct 11541 ACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCAGGAGGAATTCCTTC 11600 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| || ||| || | | || | |||||| | || || ||||| | || Sbjct 11601 TTTATCTTGTATCTTTGACTTGACATTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGT 11660 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || || |||||||| | || || ||||| Sbjct 11661 AATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11699 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| ||||| || | ||||||| || ||||| || ||||| | ||||| Sbjct 11709 CAAACGCAGCACCAAGTGAAGAGTTGACTCCTTCTGAATATTATAGTCCGATAGAGTACG 11768 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||||| || |||||||| | | |||||| ||| ||||| || ||||| || ||||| Sbjct 11769 ACCGTCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGGTCGGGAGGAATTCCTTC 11828 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| || ||| || | | || | |||||| | || || ||||| | || Sbjct 11829 TTTATCTTGTATCTTTGACTTGACGTTCTCAATAGTATCAGAAGGTTCTACTTCAAGAGT 11888 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || || |||||||| | || || ||||| Sbjct 11889 AATAGTCTTTCCTGTAAGAGTTTTCACAAAGATTTGCAT 11927 >seq6 Length=291449 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 |||||||||||||| | |||||||| || || || || || | || | || Sbjct 274531 CAAAACCAAATGTAAAGTAGACTCTTTCTGGATATTATAATCAGAAAGCGTTCTTCCGTC 274472 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | ||| || |||| | | || || | ||||||||||||||| || ||||||||||| Sbjct 274471 TTCCAACTGCTTTCCGGCAAAAATAAGTCTCTGTTGATCTGGAGGAATACCTTCTTTATC 274412 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 ||| || ||||| | ||| | ||||| | || || ||||| | || | || Sbjct 274411 TTGAATCTTGGATTTCACATTTTCGATTGTATCAGAAGGTTCAACTTCCAATGTTATGGT 274352 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| ||||||| ||||| | || || ||||| Sbjct 274351 TTTTCCAGTCAACGTTTTCACAAATATTTGCAT 274319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608620341880